Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2716 ATGCGAGGGTACACTAGAAGGATTTCCAAGGCTAAGCTCATGGCCCCTCAAATCGATCCCACTCATGCTCCAAAACAGGACCCTTCTTCTGATTCCGACTCTTTTTATTACAAACTCAACCAATTGTGGGACTCCTTCGGACTCAGTCTTATTATCAATGCCCGAGAAACTTCGCTGGACTTGTTCCTCTTTTACTCGGAGGTGACCAGAAGAGGAGGATATCATCAGGTCAGTAGAGATAGGAAGTGGGATGAACTTGTTTCTGCCTTAAAGTTGGAAGGCAATAACGCAAATTTACCTGTTCAACTTGAAAAATGCTACGCTCTACTTCTCTACCAGTTTGAGCTACTCTACCACTACAGGGATCCAGCACTTAAAGCTTCGACTAACTCCACCTTAGGTCTGCTCACAAATTGCATAAGCCCAGAAAGGAAGCGTAAATATGAGGTTTGTTTGTTTGAATTAATAGACAGCGAAGATGATGAGGTGGAGACAGAGATGTGCGAGGATATGACAGGGAGCGACCTTGTGGAACAAAAAATGGTGGTACAGGCATCCCCAGATGACAAGAAAGTGAAAAAACGCCGAGGTAAGCCACCGGGCCCGAGAACAGCATATCAGATATTCATCAAGAAGGAATGCGCTCGATTGAGGGGTTGTAATGTAGCATCTGCTCGCTCAAATATTCTGTACATGGCCATTGATGCCTGGAGGAATATGACTGAGGTTGAGAAACAGCCGTATGTGGAAGAAAGCCGGGAGGAAAAGGAAAGGCTGATGGAGGCAGCAAAAACCCTGCAACCTGATGCTGAGAACGGCAGTGATAGCTTAGAGCTTATAATGAGCAAAGAAGAAACCAGAGCCATTAACTGTTGA 876 0.4543 MRGYTRRISKAKLMAPQIDPTHAPKQDPSSDSDSFYYKLNQLWDSFGLSLIINARETSLDLFLFYSEVTRRGGYHQVSRDRKWDELVSALKLEGNNANLPVQLEKCYALLLYQFELLYHYRDPALKASTNSTLGLLTNCISPERKRKYEVCLFELIDSEDDEVETEMCEDMTGSDLVEQKMVVQASPDDKKVKKRRGKPPGPRTAYQIFIKKECARLRGCNVASARSNILYMAIDAWRNMTEVEKQPYVEESREEKERLMEAAKTLQPDAENGSDSLELIMSKEETRAINC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2716 291 SUPERFAMILY HMG-box 182 262 IPR036910 -
Mibi06g2716 291 CDD HMG-box 199 262 - -
Mibi06g2716 291 Pfam HMG (high mobility group) box 199 264 IPR009071 -
Mibi06g2716 291 ProSiteProfiles ARID domain profile. 29 119 IPR001606 GO:0003677
Mibi06g2716 291 SMART ARID_2 26 115 - -
Mibi06g2716 291 Gene3D High mobility group box domain 184 276 IPR036910 -
Mibi06g2716 291 SMART bright_3 30 120 IPR001606 GO:0003677
Mibi06g2716 291 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 199 267 IPR009071 -
Mibi06g2716 291 Pfam ARID/BRIGHT DNA binding domain 32 115 IPR001606 GO:0003677
Mibi06g2716 291 Gene3D - 10 132 IPR036431 GO:0003677
Mibi06g2716 291 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 161 262 - -
Mibi06g2716 291 SUPERFAMILY ARID-like 27 121 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2716 58 258 ARID Transcription Factor Family AT1G55650 27.570 3.63e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mibi06g2716 ARID 6.5e-12 CL0123