Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2680 ATGACCCGAAGAAGGAAACCGACCCGTTTGAAATATCTGAATAAATATCCGTCAGTAGCAGAAGGAGGTGGAGGTCAAAAAGGCCATACATTCCCTCTGGAAGAGCGTGGCCTTATCCTCTCCTTTACTACACTCTCCACCCTATCCCCTCCCGCCTCTCGCCGTTTCTTCCATCCCCTCACACTCGATTCTCTCCCCTTGTTCTCTGAAGTGAATTGGAGTGAATACTTCCTGCTTCTCAGATATTCAAGTGAGCAAGGCTCTTGTTTTCAGGAGACCATCATGTCTTCTGTCATAGGCGTTTCCTCTATATACCAGACTCCGTCCCTGGAACTTTATAAAAGAGCCTCAACAACAACTACTACAGGTGCTACCACCCCCCTTTCCTTCCTATTTTCTGACAACAAGTCCCACTTTAACAACGTTCTCAGGGCTCACCTCACTAACAATGGCGGCGGGAATTTTAAGACTGGCACCAAACCTAGAGCTGGCTTTGTTCCTTCTTCCATTGCCACCCCCAATTCTTCCGTTCTCAGTGAAGAAGCCTTCAAGGGTTTAGGTCGGGATTTCTCCGACCAAGACTCTTTGGATGATGTTATTGACAACGATGACGACTATGCCTATGACTCTGAAACTGAGCCTTCTTCAGCTCTTGACAGCGAGGAGGAGCTCGACGTTTCCAAGCTCGGCTTGCCTGCCCCCCTCGTTGATTCACTCCACCAACGTGGGATTACTCGTCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCCCTCCAAGGTCGAGATCTTATTGCCCGAGCGAAGACTGGGACTGGAAAGACTTTGGCGTTTGGGATTCCAATTATTAAAGGGCTCACTGACGAGGAACAAAGAACCTCCCAGAGACGATCTGGTCGTCTCCCCAAAGTACTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGATAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACAATTTGTGTTTACGGGGGCGTTTCTTATGTTACCCAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGGACGCCTGGTAGAATAATTGACCTGATAAACGGGAACAGTCTTAAGTTGAATGAAGTAAAGTATCTGGTCCTTGACGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAAATAATCTTAGAGAAACTGCCATCTAAACGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGCTGGGTGAAGAAACTTGCCAGAAAATATTTAGACGATCCATTGACAATTGATTTGGTTGGGGAGGAAGAGGAAAAACTTGCGGAAGGAATTAAACTTCACGCAATATCAGCCACCTCCACTTCTAAGCGGACAATGCTTTCTGATCTCATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGCATACCTTCTGAGGCACTGCATGGGGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTAGCAGCACGTGGACTTGATATTCCTAATGTTGATTTGATTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGCAAGGTACTGCCATTTTGATGTACACCAGCAGCCAGAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTACTCCGCCGGCTATAGATGATGTTTTGGAATCATCAGCTGACCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAATCCGTCGAGTTTTTCACCCCAACTGCGCAAAAATTGATTGAGGAACAAGGAACAAGTGCCCTCGCAGCTGCACTAGCACAACTAAGTGGATTTGCAAAACCTCCCTCATCCCGATCTCTCCTCAACCATGAGCAGGGATGGGTTACATTACAACTGATTCGAGATCAAGGAGATTCTAGAAGGTTTATGTCTGCAAGATCGGTAACTGGGTTTCTGTCCGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAATGGTTCAAGGGGCCGTGTTCGATCTCCCAGAGGAGATTGCTAGAGAGTTACTGAACAGGGAAATACCAGCTGGCAACACAATTTCTAAGATCACTAAGTTGCCTCCTTTGCAAGATGATGGGCCTGCAAGTGATTTCTATGGGAAATTTTCTGACAGAGATCGCAGAGGTTCTAGGGATCGGAGAGGTTTTAAAACCTCACGGGGCCGTGGTTCTGATGATGATTTTGGTGATTCATTTGGAAGAGGAGGTCGAAGTTTTAGAAGCAGCAATAGCTGGTCTCAAAAGGGAAGAAATAGCGGAGGCTTTGATGAATTTAGTGATTCAAATAGGAGAGGGGGTCGAAGTAATAGAACTGGTAATAGCTGGTCTCAAAGAGCAAGAAGCAACGATGATGATTGGCTAATTGGAGGTAGAAGATCAAGCAGGTCTTCATCTTCAGATAGAAGCTTTGGAGGGGCTTGTTTTAACTGTGGGCAATCCGGACATCGTGCATCTGAATGTCCCAACAAATTAGGCTTCTAA 2670 0.4536 MTRRRKPTRLKYLNKYPSVAEGGGGQKGHTFPLEERGLILSFTTLSTLSPPASRRFFHPLTLDSLPLFSEVNWSEYFLLLRYSSEQGSCFQETIMSSVIGVSSIYQTPSLELYKRASTTTTTGATTPLSFLFSDNKSHFNNVLRAHLTNNGGGNFKTGTKPRAGFVPSSIATPNSSVLSEEAFKGLGRDFSDQDSLDDVIDNDDDYAYDSETEPSSALDSEEELDVSKLGLPAPLVDSLHQRGITRLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIKGLTDEEQRTSQRRSGRLPKVLVLAPTRELAKQVDKEIKESAPYLSTICVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLNEVKYLVLDEADQMLAVGFEEDVEIILEKLPSKRQSMLFSATMPSWVKKLARKYLDDPLTIDLVGEEEEKLAEGIKLHAISATSTSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFITPPAIDDVLESSADQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQLSGFAKPPSSRSLLNHEQGWVTLQLIRDQGDSRRFMSARSVTGFLSDVYSPAADEVGKIHIIADEMVQGAVFDLPEEIARELLNREIPAGNTISKITKLPPLQDDGPASDFYGKFSDRDRRGSRDRRGFKTSRGRGSDDDFGDSFGRGGRSFRSSNSWSQKGRNSGGFDEFSDSNRRGGRSNRTGNSWSQRARSNDDDWLIGGRRSSRSSSSDRSFGGACFNCGQSGHRASECPNKLGF 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2680 889 MobiDBLite consensus disorder prediction 828 844 - -
Mibi06g2680 889 CDD SF2_C_DEAD 446 575 - -
Mibi06g2680 889 CDD GUCT_Hera 660 733 - -
Mibi06g2680 889 Pfam Zinc knuckle 869 885 IPR001878 GO:0003676|GO:0008270
Mibi06g2680 889 Gene3D - 854 888 - -
Mibi06g2680 889 FunFam Nucleolar RNA helicase II 454 644 - -
Mibi06g2680 889 Gene3D - 447 650 IPR027417 -
Mibi06g2680 889 SUPERFAMILY Retrovirus zinc finger-like domains 857 887 IPR036875 GO:0003676|GO:0008270
Mibi06g2680 889 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 207 821 - -
Mibi06g2680 889 Pfam GUCT (NUC152) domain 653 753 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mibi06g2680 889 ProSiteProfiles Zinc finger CCHC-type profile. 870 885 IPR001878 GO:0003676|GO:0008270
Mibi06g2680 889 SMART ultradead3 243 449 IPR014001 -
Mibi06g2680 889 MobiDBLite consensus disorder prediction 761 796 - -
Mibi06g2680 889 FunFam ATP-dependent RNA helicase RhlE 216 435 - -
Mibi06g2680 889 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 432 IPR014001 -
Mibi06g2680 889 CDD DEADc 235 433 - -
Mibi06g2680 889 Pfam DEAD/DEAH box helicase 248 421 IPR011545 GO:0003676|GO:0005524
Mibi06g2680 889 SMART helicmild6 486 566 IPR001650 -
Mibi06g2680 889 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 606 IPR001650 -
Mibi06g2680 889 SMART c2hcfinal6 869 885 IPR001878 GO:0003676|GO:0008270
Mibi06g2680 889 MobiDBLite consensus disorder prediction 799 821 - -
Mibi06g2680 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 587 IPR027417 -
Mibi06g2680 889 MobiDBLite consensus disorder prediction 746 865 - -
Mibi06g2680 889 Pfam Helicase conserved C-terminal domain 459 566 IPR001650 -
Mibi06g2680 889 Gene3D - 225 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2680 Mibi-ChrMibi06 46815915 46821499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2680 229 606 Eukaryotic Initiation Factors Gene Family AT1G72730 36.434 1.82e-63 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2680 06 46815915 46821499 Mibi06g2680 06 46815915 46821499 ECH