Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2610 ATGGGAGAGGTTATTATGTTTATCGATGATTTGAAATCATTCTCTGGGATTTCTCGATGCAGAATATGTCATGAAGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCATGTGCTTGTTCTGGGACCGTTAAGTTTGCACACAGAGATTGCATACAAAGATGGTGCAATGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGAAATATGAACCTGGTTACACGGCTCCTCCTCCAAAGAAATTGCAGATGAACGATGAAGCAATGACCATTCGAGATAGCCTGCAAATCTCAAGAATGGAGGAAGAATCGCTGAATGCAAGATTAGAGGCAATAGTTGAAAGAGTGACAATAGAAAATGATTACTCTGAATGCACGTCTGCTGCAGATAGAAGTGCATCTTACTGTCGATTCCTGGCCTTGGCATTTACCCTGTTTATGCTTGTGAGACATCTTATCGCTGTGCTCACAAGTGGGAAGGAAGATTACCCATTTACACTTCTAACTGTTTTAATGCTAAGGGCCAGCGGGATTGTGCTGCCCATGTTCATAATTATTAGAATGATTGGAGCGATTCAAAACATAATTCAGCGCCGTTATCAGGATACTGAAGATAGCGCAGAAGCATCTGATGGATACGACAACGAACACGGGACACTGCGTGATGTGATTTTTAGACACGCTTAG 690 0.4145 MGEVIMFIDDLKSFSGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQKYEPGYTAPPPKKLQMNDEAMTIRDSLQISRMEEESLNARLEAIVERVTIENDYSECTSAADRSASYCRFLALAFTLFMLVRHLIAVLTSGKEDYPFTLLTVLMLRASGIVLPMFIIIRMIGAIQNIIQRRYQDTEDSAEASDGYDNEHGTLRDVIFRHA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2610 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Mibi06g2610 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Mibi06g2610 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 200 IPR033275 -
Mibi06g2610 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Mibi06g2610 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mibi06g2610 229 Pfam Protein of unknown function (DUF3675) 73 190 IPR022143 -
Mibi06g2610 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Mibi06g2610 229 SUPERFAMILY RING/U-box 18 72 - -
Mibi06g2610 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2610 Mibi-ChrMibi06 46180540 46183050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2610 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.53e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0381 02 3866917 3870784 Mibi06g2610 06 46180540 46183050 CCT
Mibi06g2610 06 46180540 46183050 Mibi06g2610 06 46180540 46183050 ECH