Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2605 ATGTTGGAGACAAGTGTTCCATCGCAAGTGTTTCGCAATATTCGTTTCGTTCTTTTTGGTTTTGATCCTGTCAACGAAAGCAAGGTTCGATTCAAGCTTGTAAACGGCGGTGGAGTTGATGTTGGTCAGTATGGTGCAAATTGCTCACATGTCGTTGTGGGCAAACTTACATATGATGATCCTATTTGCGTTGCTGCAAGGAGTGATGGGAAGACGCTCGTCACTGCTTTGTGGGTTGATCACAGTGTCGATATTGGAATGCCAGTTGATGCAACCTCCGTCATGTACAGGCCCCTGAAAGATTTAAATGGTATACCGGGTGCTAAGAATTTTGTCGTTTGCTTGACTGGTTATCAACGTCAGGATAGGGATGACATTATGACCATGGTTGGCTTGATGGGTGCTGAATTTTCTAAGCCATTGGTTGCAAGCAAAGTAACTCATCTTATATGCTACAAATTCGAAGGAGAAAAGTATGAGCTTGCCAGGAGATTGCAGACAATTAAGTTAGTTAATCATCGGTGGTTGGAAGACTGTTTGAAGGATTGGGCGCTTCTCCCTGAAGATAAATATAAGAAGAGTGGTTATGAACTAGAGATGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAACTGAAGATCCCGTGCCAGTGAACTCTGGGGGAGGAGATATAACTAAGAGTCCCTTCAGTTCAAAAAGTAATTCTGCTACGTCCCATAACTCATCAAAACCTGTTATTGTAGAATCAAATGCCCTCCAAGGTTCTGCTGGTCCTGAGGGATTGCTAAAAGCAAATGAGGGGTGTGGGCCATCATTGATTCTGAAAAATGAGAATAGATCTGATCAAACCGCACACATCCATGATGATGTTCTAAAATTAAGTTCTGGGTATCCTGGCGTTTCTAGGCATGATGCATTTCGTCCGGTACCCGAAACCTGTGCCAAGACCGCTAAACCTAAAAGTCCTCGTGTGCAAGATGCAGTTGACGGCCAGAATCTTGGCATTCCTGGAAATGATGACTCATCAGATCACCTTCCTAATCTTCAGGCTGGTACTTCTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACTTCCGAAAGTGTTGAAGGACATGTACATTCAGATGCAAAGGTTAGTGCTGCAAGTAATCCTAGAAAAAACTTAAAGATATCTTCTCCTCCAAGTGGCTTGAATGAAAACCTTGGCAGTTTAAGTGATCCTTCTACATCACCTTTAAATAATTTGAAATTAAGAAATGAGCTAGAAGCCTCTTCAAGCAAGATGGAAAAGGCAAGCGACAGCATCAACTTCACCTTCGTTGAAGGTTTTGGAATAGGAAATGATGTTAGTAACAAGAAAGGGCCGAGCAATTTGTTACCTAAAAAAAGGACAATTAACTCTTCTAAAATTAAATCGAAGGTGACAACAGATACAAAACTTTCCATTGAAAGATCCCTATCAGCAGATAGCAATAAACTTCAAGAGATAGGACACCATTTTCCTGTGGGCAGAGATGATACAAAGGATCCAGAAACTGTTGGCACAAAGTCTCGGCAAGATGGTGCACCCAAAATTAATGAGCCTGAAATTCCAGATTTTGGCAGGGAAGAAGCTGCTCAAGATGGCAATGATACAGAACCTCAAAATGCCAGGGACGATCTTGAATGCTCATATTCAATTAAAAAGAAGTCTAGAAATGAGGAAGCAGCTGGTCATGCTACCGTGGAATTATGCAACAAAGTAAGTGATAAGTTGATTAGAAAATCACCCCGCAAGAAGGCAGTTGCCAAGAAATGTTTGGGTTCTAGACCTAAATCAGGTGTTACTGTTAAAAAGAGGGGTTTGATTCCATTAAATGAAAGTATTCCTCAAGCTGATGGTGCAGGTTGCTTAAGTGGATGGAAAGAGACGGCACTTAGTGATGGCAAGAAGCTTCATAAATCCTCTAAAGTTGTTGGTGTTGCAACGTCAATGGAGCAGGAGAGTGTCTGTAAATCTGCAGAAAATGCCAATGGCAGAGAATTTCAGGATGAAGAAACAGAGTCTCCGGATGATAAATCTGAGTACAAGGGACTGGCAGTTGATGAAGACAATCGTGAATCAATTCATCTTTTTGAAAAATCTGGTGCACACACAGAAGAGAAGTTGGAAGCAACTAACCATGTATCAAAATCTAAATCAAAGGTGCCAAAGGAAGGTACAAATGGAACTAAACCAGTGGTACTTGGGCCAGTAGACACAACCTCTAAAGGAAAAGGAAAGCCTAAAGGAAGAAAACTTGCTAAAGGTATAGCCAATAAAACTACATTTACCAAGGATATAATGAGGCCTGAGGAGGCTGCATCGAGTGGGAGGAAAGATGAGACAATTATGGAAACCATGAAAACAGTTTTATTTCCTGCTAATAAAAATAGCAGCTCATCAGTACTGACAAATAGTTCAGGGAGCTTTCAGGAAGTTGAGAAGGAAAACAGGCCAATCGATGGAGAGGGTATAAACATTGGAAATTCGGTTATTAAAGTTAGTGCAGGTCAAGCAAAGATCAATCAAAAGACCCAGAAAAAAGCTCTTAATACATCTACATCGGAAGATAACAAAAGAGTGAAAGGAGAAGCTGCATGTTTTATAGTAAGTGGGCAACGCTTACAAAGAAAGGAGTTTCAACAAATGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATTCCCATCAGTGGTCATATCAGGCAACACACTTTATAGCCCCAGATCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGGAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTCAGGCCGGTAAATTCTTGACAGAAGAACCTTATGAGTGGTACAAGAGTGGCCTTAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGCGATTTTTGAGAGAGAAGACAGGCCATGGCGTCTTATACGGAATGCGCATCATTGTATACGGCGATTGCATTGTCCCACCTTTGGATACACTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCTCCTCCTTACACCCGGTTCCTTGATACCGGTGTTGACTATGCCGTAGTGAGCCAGGGCATGCCACGTGCTGACATGTGGGTCCAAGAATTCTTAAAGCACGAGATACCCTGTGTTTTAGTTGACTACTTGGTGGAGTATGTGTGCAAGCCCGGGTTCTCCCTGGAGAAATATGTACAGTATGGGACTAATGCTTGGGCAGAGAGGTCATTTGCTAACCTTCAAAAGAAGGCGGAAGAGGTCATCGAGAATCCTCCAGAAATTGATGATAATGACACGGCATGCCAAGTATGTGGATCCCGAGATAGAGGAGACGTAATGCTGATTTGTGGTGACGAAAGTGGTTCCGTTGGTTGTGGAGTTGGTATCCATATCGATTGCTGCGATCCTCCTCTAAAAGATATTCCTGAGACGGATTGGTTTTGTCCCAAATGCAGTGAAACCCGAAGCTGCTCTAACTCTAGCAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCAAAGAGCAAGTGA 3579 0.425 MLETSVPSQVFRNIRFVLFGFDPVNESKVRFKLVNGGGVDVGQYGANCSHVVVGKLTYDDPICVAARSDGKTLVTALWVDHSVDIGMPVDATSVMYRPLKDLNGIPGAKNFVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELARRLQTIKLVNHRWLEDCLKDWALLPEDKYKKSGYELEMMAEEAKDSEEETEDPVPVNSGGGDITKSPFSSKSNSATSHNSSKPVIVESNALQGSAGPEGLLKANEGCGPSLILKNENRSDQTAHIHDDVLKLSSGYPGVSRHDAFRPVPETCAKTAKPKSPRVQDAVDGQNLGIPGNDDSSDHLPNLQAGTSEYGKLVNDLRLTSESVEGHVHSDAKVSAASNPRKNLKISSPPSGLNENLGSLSDPSTSPLNNLKLRNELEASSSKMEKASDSINFTFVEGFGIGNDVSNKKGPSNLLPKKRTINSSKIKSKVTTDTKLSIERSLSADSNKLQEIGHHFPVGRDDTKDPETVGTKSRQDGAPKINEPEIPDFGREEAAQDGNDTEPQNARDDLECSYSIKKKSRNEEAAGHATVELCNKVSDKLIRKSPRKKAVAKKCLGSRPKSGVTVKKRGLIPLNESIPQADGAGCLSGWKETALSDGKKLHKSSKVVGVATSMEQESVCKSAENANGREFQDEETESPDDKSEYKGLAVDEDNRESIHLFEKSGAHTEEKLEATNHVSKSKSKVPKEGTNGTKPVVLGPVDTTSKGKGKPKGRKLAKGIANKTTFTKDIMRPEEAASSGRKDETIMETMKTVLFPANKNSSSSVLTNSSGSFQEVEKENRPIDGEGINIGNSVIKVSAGQAKINQKTQKKALNTSTSEDNKRVKGEAACFIVSGQRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTACSQAGKFLTEEPYEWYKSGLSEDGAINLEAPRRWRFLREKTGHGVLYGMRIIVYGDCIVPPLDTLKRVVKAGDGTILATSPPYTRFLDTGVDYAVVSQGMPRADMWVQEFLKHEIPCVLVDYLVEYVCKPGFSLEKYVQYGTNAWAERSFANLQKKAEEVIENPPEIDDNDTACQVCGSRDRGDVMLICGDESGSVGCGVGIHIDCCDPPLKDIPETDWFCPKCSETRSCSNSSKKRKKGVLSSSKSK 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2605 1192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1082 1172 IPR013083 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 500 517 - -
Mibi06g2605 1192 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 751 1183 IPR044254 -
Mibi06g2605 1192 Pfam BRCA1 C Terminus (BRCT) domain 878 945 IPR001357 -
Mibi06g2605 1192 Pfam twin BRCT domain 112 175 IPR001357 -
Mibi06g2605 1192 Gene3D BRCT domain 99 219 IPR036420 -
Mibi06g2605 1192 ProSiteProfiles Zinc finger PHD-type profile. 1115 1171 IPR019787 -
Mibi06g2605 1192 SUPERFAMILY FYVE/PHD zinc finger 1108 1174 IPR011011 -
Mibi06g2605 1192 SMART BRCT_7 987 1074 IPR001357 -
Mibi06g2605 1192 SMART BRCT_7 867 949 IPR001357 -
Mibi06g2605 1192 SMART BRCT_7 106 183 IPR001357 -
Mibi06g2605 1192 SMART BRCT_7 8 86 IPR001357 -
Mibi06g2605 1192 Gene3D BRCT domain 987 1081 IPR036420 -
Mibi06g2605 1192 Gene3D BRCT domain 871 985 IPR036420 -
Mibi06g2605 1192 ProSiteProfiles BRCT domain profile. 877 959 IPR001357 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 314 351 - -
Mibi06g2605 1192 CDD BRCT_TopBP1_rpt7 876 949 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 382 416 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 806 822 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 202 246 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 494 559 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 1169 1192 - -
Mibi06g2605 1192 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Mibi06g2605 1192 Coils Coil 416 436 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 372 416 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 524 559 - -
Mibi06g2605 1192 Pfam PHD-finger 1118 1170 IPR019787 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 336 350 - -
Mibi06g2605 1192 Gene3D BRCT domain 1 95 IPR036420 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 659 762 - -
Mibi06g2605 1192 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 806 825 - -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 224 246 - -
Mibi06g2605 1192 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Mibi06g2605 1192 SMART PHD_3 1117 1169 IPR001965 -
Mibi06g2605 1192 MobiDBLite consensus disorder prediction 673 730 - -
Mibi06g2605 1192 SUPERFAMILY BRCT domain 877 960 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2605 Mibi-ChrMibi06 46137014 46142913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2605 129 214 Core DNA Replication Machinery Family AT4G02110 73.256 1.87e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi06g2605 BRCT 6.5e-08 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2605 06 46137014 46142913 Mibi06g2605 06 46137014 46142913 ECH