Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2595 ATGGATGTGAAAGCAGAGAAAATTTGCAGGGATTGCCACACAAGGACTACACCACTTTGGAGAGCAGGTCCAGATGGGTCAAGGTCTCTATGTAATGCGTGCGGGCTACGATTCAGAAAGCGAATGGCTCTACGAGGACTGAATAGTGCAGTATCGCAAAAGCGCAGGAAGAGGAGTTACACTGGGAGAGCCATGAAGAAGTTAAAAGAGGAAGAAGAAGCCGCTATGTCACTTATGGCTCTTTCTTGTGGCTCTCTCTACCTAACAGAACGACACTAG 279 0.4767 MDVKAEKICRDCHTRTTPLWRAGPDGSRSLCNACGLRFRKRMALRGLNSAVSQKRRKRSYTGRAMKKLKEEEEAAMSLMALSCGSLYLTERH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2595 92 PANTHER OS01G0976800 PROTEIN 5 57 - -
Mibi06g2595 92 CDD ZnF_GATA 8 41 IPR000679 GO:0006355|GO:0043565
Mibi06g2595 92 ProSitePatterns GATA-type zinc finger domain. 9 34 IPR000679 GO:0006355|GO:0043565
Mibi06g2595 92 Pfam GATA zinc finger 9 41 IPR000679 GO:0006355|GO:0043565
Mibi06g2595 92 ProSiteProfiles GATA-type zinc finger domain profile. 3 63 IPR000679 GO:0006355|GO:0043565
Mibi06g2595 92 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 50 - -
Mibi06g2595 92 Gene3D - 4 74 IPR013088 GO:0006355|GO:0008270
Mibi06g2595 92 SMART GATA_3 3 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2595 Mibi-ChrMibi06 46068796 46069178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2595 6 87 C2C2-Gata Transcription Factor Family AT5G49300 42.308 1.16e-18 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi06g2595 GATA 1.1e-17 CL0167