Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2578 ATGCCCACAATGCAGCAGCTCAAGAGAAGAACACTGCTCTCATTGGCCCTTCTTTCTCTAATCCTGCTTGTTGTGGATGCAACAGAGCCACAAGATACAAAACACCTACATTTTCAGAAACACCTTCAAGTAGCTCACTCCACCTGCTATGGGACACTCTACCCCGACCTCTGTGTCTCAACCCTTTCTTCCTTCCCTGATCTTACCTCAAAATCTGTTCCCCAAGTCATATGTTCCCTCGTCAACCACACCATGTACGAGGTAAATTCCTCATCCTCTAACTGTACTGGTCTGAGAAAAAAGCTCAGAAGTCTTAACCCAATTCAACAGAGAGCCCTCGATGACTGCCTCCAGCTATTTGATCACACTCAGGAGGAGTTCAAAACCAGCATAACCGATCTCTCCTACACAAACATTGATTCCAAACGCTACCACGATTCGCAGACTCTGCTCAGCGCCGCAATGACCAATGTTTACACTTGTCTCGACGGCTTTTCCGACGGTGACCCCAATAGCCACGTGAGACGCATCATCCAGGACAACTTGTACAGGATTTGCCACCATGTTAGTAACTCATTGGCCATGCTCAACAAAATTAAAGGCGTTAAGAAATTACAGCCCTCCTCGTCTTCCCGGGCATTCAGAATGAAGCATGGCTTCCCTTCTTGGCTTACCTCCAAAGACAGAAGGCTACTTCAAGCCTCTGTTAATAGGACAAAGTTCGATCTCGTGGTGGCCAAAGATGGCTCCGGCAATTTCACCACTATTGGGGAAGCAGTAGCTGCAGCCCCCAACTCCACCAAAACTAGGCACGTTCTTGTGCAATTACATGTGGTCATATTGTTTGTGATACACATAAAAGCTGGGGCGTACTTCGAGAATGTGGAGGTGATAAAGAAGAAGACGAATCTGATGTTCGTTGGAGATGGGATTGGGAAGACGGTAGTGAAGGCCAGTAGGAATGTGGTGGATGGTTGGACCACTTTTCAATCCGCAACTGTAGCGGTGGTGGGAGAGGGATTCATAGGGAAAGGGATAACAATAGAGAACTCGGCGGGGCCCAGCAAGCACCAGGCGGTGGCCCTAAGGAACGGCGCCGATCTCTCCGTGTTCTACCAAAGCAGCTTCGTCGGCTACCAAGACACACTCTACGCTCACTCCCTCCGCCAATTCTACAGAGAATGCGACATTTACGGCACCGTCGACTTCATATTCGGCAACGCAGCCGCCGTCATCCAGAACTCCAACCTCTACGCCCGCAAGCCCAACCCCAACCAGAAGAACCTCTTCACCGCCCAGGGCAGGGAAGACCCTAACCAGAACACTGGCATCTCCATCATCAACTCCAAGGTCGCCGCCGCCTCCGACTTGATCCCGGTGAAGTCCTCTTTTCCCACGTATCTTGGGAGGCCCTGGAAGTTGTACTCCAGGACTGTGTATTTGGGGTGTTTGATGGAGGACTTGATTAATCCTGCTGGCTGGTTGGAGTGGAATGGCTCTTTTGCTTTGGATACTCTCTATTATGGGGAGTACCACAACAGGGGTCCTGGTTCTAATACCAGTGGCAGGGTGACGTGGAAGGGGTTCAGGGTCATTAATTCGTCTACCGAGGCTTCTCAGTTTACTGTTTCCCAGTTCATTCAAGGCGGTGATTGGTTGAACTCCACCGGTGTTCCTTTCTTCCCTGGTCTCACCCCCTGA 1701 0.5038 MPTMQQLKRRTLLSLALLSLILLVVDATEPQDTKHLHFQKHLQVAHSTCYGTLYPDLCVSTLSSFPDLTSKSVPQVICSLVNHTMYEVNSSSSNCTGLRKKLRSLNPIQQRALDDCLQLFDHTQEEFKTSITDLSYTNIDSKRYHDSQTLLSAAMTNVYTCLDGFSDGDPNSHVRRIIQDNLYRICHHVSNSLAMLNKIKGVKKLQPSSSSRAFRMKHGFPSWLTSKDRRLLQASVNRTKFDLVVAKDGSGNFTTIGEAVAAAPNSTKTRHVLVQLHVVILFVIHIKAGAYFENVEVIKKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGEGFIGKGITIENSAGPSKHQAVALRNGADLSVFYQSSFVGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVIQNSNLYARKPNPNQKNLFTAQGREDPNQNTGISIINSKVAAASDLIPVKSSFPTYLGRPWKLYSRTVYLGCLMEDLINPAGWLEWNGSFALDTLYYGEYHNRGPGSNTSGRVTWKGFRVINSSTEASQFTVSQFIQGGDWLNSTGVPFFPGLTP 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2578 566 SMART PMEI_2 40 195 IPR006501 GO:0004857
Mibi06g2578 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 197 IPR006501 GO:0004857
Mibi06g2578 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Mibi06g2578 566 FunFam Pectinesterase 236 564 - -
Mibi06g2578 566 SUPERFAMILY Pectin lyase-like 239 563 IPR011050 -
Mibi06g2578 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 201 IPR035513 -
Mibi06g2578 566 Pfam Plant invertase/pectin methylesterase inhibitor 46 195 IPR006501 GO:0004857
Mibi06g2578 566 CDD PMEI-like_3 47 199 - -
Mibi06g2578 566 Pfam Pectinesterase 242 549 IPR000070 GO:0030599|GO:0042545
Mibi06g2578 566 PANTHER PECTINESTERASE 23 554 - -
Mibi06g2578 566 Gene3D - 236 564 IPR012334 -
Mibi06g2578 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2578 Mibi-ChrMibi06 45921531 45925427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2578 69 560 Carbohydrate Esterase AT4G02320 51.889 0.0 521