Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2544 ATGAGCGATAACTCAGAGAGATCAGAAGGCTTTAATAAGTACAACTTCAACAACAAGAACAACAACACAGGTTCTCATCTTCATCATCAAGATGTGGGAATCGTCAAAGAGCAAGATCGTTTGCTTCCAATAGCTAATGTTGGGAGGATTATGAAGCAAATTCTGCCTCCAAACGCCAAAGTCTCAAAAGAAGCAAAGGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTGACTGGGGAGGCATCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTGAATGGAGATGATATTTGCTGGGCCCTTGCTACTTTAGGGTTTGATGACTACGCTGAGCCACTCAAGAGGTATTTGCTTAAGTTTAGAGAATCTGATGGCGAGAGAACTAATCACCAAAATAAGGCTAACAATATTCATGCTACTCATGAACTCAATATCATTGGTGATGATGATCAAGCTTATGAATATGGCGGTGAGCCTCCTAGGAGAGACCCCACTACTAGTGGTAGCTCAATGATGAGGTTCAATAATAGCACTTCTCACCCACACCAGTTTTCAAACTTCTAG 576 0.4201 MSDNSERSEGFNKYNFNNKNNNTGSHLHHQDVGIVKEQDRLLPIANVGRIMKQILPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESDGERTNHQNKANNIHATHELNIIGDDDQAYEYGGEPPRRDPTTSGSSMMRFNNSTSHPHQFSNF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2544 191 MobiDBLite consensus disorder prediction 167 191 - -
Mibi06g2544 191 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Mibi06g2544 191 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Mibi06g2544 191 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Mibi06g2544 191 MobiDBLite consensus disorder prediction 1 23 - -
Mibi06g2544 191 Gene3D Histone, subunit A 29 156 IPR009072 GO:0046982
Mibi06g2544 191 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mibi06g2544 191 SUPERFAMILY Histone-fold 38 160 IPR009072 GO:0046982
Mibi06g2544 191 MobiDBLite consensus disorder prediction 154 191 - -
Mibi06g2544 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi06g2544 191 FunFam Nuclear transcription factor Y subunit B-3 30 153 - -
Mibi06g2544 191 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2544 Mibi-ChrMibi06 45648383 45648958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2544 34 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.905 7.64e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi06g2544 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2544 06 45648383 45648958 Mibi06g2544 06 45648383 45648958 ECH