Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2543 ATGGCAACGAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAACTTGCAGTTACACAGGAGAGGACACAATCTGCCATGGAAGCTGAGGCAGAGAGCGAGCAATGAGGTGAGCAAGAAAAGAGTGTACGTGTGTCCAGAGCCTTCATGCGTCCACCATAGCCCAGCTCGAGCACTAGGAGACCTCACCGGCATCAAAAAGCACTTCAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAATGCTCCAAAAAATATGCCGTTCAATCTGATTGGAAAGCCCACAAGAAAACCTGCGGTACCCGCGAATACAAATGCGATTGTGGCACCATATTTTCTAGGAGAGACAGTTTCATAACTCACAGAGCATTTTGCGATGCATTGGCTGAAGAAAACAACAGGGTGAATTCTGCAGTGTCTCTGAACACTCATTCCAACAACATATCGTCTGAATTAAACACAATGGCTGCTCAAGAAATTTTTCCGTTACCATTCAAGTCGACGAGAAGGAGCATGTGGGGAGGAATGTTCACCACCACTTCAAGTTCTCTTCTCGCTGGTCCAAAAAGCTTGCCTCCTCCTCTTCCCAGCTCCCCTGTTTTCAATTCCATCCAAGATGGCCGCAAAGTTTCAGAGTTAGCTCACGCCTCTGCAACGGCTTTACTGCAAAAAGCAGCTCAAATGGGGGCCACAGCGAGTAATGATAGCAATAATAATTCTCATATGGTTCAAAAAGGCTATGTTACTTCCATGGCGGGTCCTGATTACCACCCTGAACCAAATTTGGCTTCGGGGATTAGTGGAGTTGGAGAATTCAGCAACCTGTTGTTCCAGAAAGGTTCTCAAGAAATAGCTGCTTTGAATGATATGGACATGTTGAGCCAAATGGTGATGGGAGGAAGAGATGGAGCAGCAAGTGATATGACCAGAGTTCATGACTTCTTGGGCGTTGGGGGACCCACTCCCATGCTGCCGCCCAATTTGCAAGCAGATTGGAGTTGGAAGCAACTTTGA 1032 0.468 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVSKKRVYVCPEPSCVHHSPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHKKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNRVNSAVSLNTHSNNISSELNTMAAQEIFPLPFKSTRRSMWGGMFTTTSSSLLAGPKSLPPPLPSSPVFNSIQDGRKVSELAHASATALLQKAAQMGATASNDSNNNSHMVQKGYVTSMAGPDYHPEPNLASGISGVGEFSNLLFQKGSQEIAALNDMDMLSQMVMGGRDGAASDMTRVHDFLGVGGPTPMLPPNLQADWSWKQL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2543 343 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Mibi06g2543 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Mibi06g2543 343 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Mibi06g2543 343 FunFam Zinc finger protein MAGPIE 2 29 - -
Mibi06g2543 343 Gene3D Classic Zinc Finger 61 155 - -
Mibi06g2543 343 Gene3D Classic Zinc Finger 6 49 - -
Mibi06g2543 343 SMART c2h2final6 83 103 IPR013087 -
Mibi06g2543 343 SMART c2h2final6 6 28 IPR013087 -
Mibi06g2543 343 SMART c2h2final6 48 78 IPR013087 -
Mibi06g2543 343 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
Mibi06g2543 343 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mibi06g2543 343 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 323 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2543 Mibi-ChrMibi06 45620463 45621830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2543 1 239 IDZ Gene Family AT1G55110 58.687 4.40e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi06g2543 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1415 02 14099166 14101076 Mibi06g2543 06 45620463 45621830 CCT
Mibi06g2543 06 45620463 45621830 Mibi06g2543 06 45620463 45621830 ECH