Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2489 ATGGAAGTGAGTGCGGAGGAAGCGTCCCTACAGAGAAGCCAGCAACTTAGGGAGCTCTATGAATCACTGTCTGCCGGAGAGACCAACCCTCCGGCTCGACGCCCTTGTGCTTCCTTGTCCCCCGAGGACCTCACCGAATCCGAATGGTTCTATTTGATGTGCGTTTCTTTCTCCTTCCCTCCTGGCGTCGGGTTACCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTCGCTGGTGCAAACGAGGTGGACAGCAAAACGTTTTCAAGAGCTATTCTCGCCAAGGTTCAGGAAGACCTTAATTTTATCCAACATGTGAAGAGCTTCTTCATAGATCACCAGAGGCAGCACCACCCTCCTCCGCCCAAGCCCGCCCTCTCCGAGCACTCAACCTCCAATCCCACGGCCATCTACTCCGCTGTGGACCCCACCCCCGCCACCCCAGCCGCTGCCAACAACCACATCAATGAAGACGACGAGGACGAGGACGACGAGGACGAGGCTGAATCCGACTCGGAGGCCGAAACGGCCCGGAACAGCCGCCCAACTTGTACGCCGGAGGCCTCCGGGGTGGCGGTTGCCACGGCTGCAGAGCCGAGCGAGCTAATGCAGCTGGAGATGTCGGAGGATATACGTGTGGGATCACCGGACGATGGCTCCAACAACCTTGACTCGGATTTCCACATGCTAGCGGTGAGCCACCCAACGGATCATGAGAGACGAGCTGACTCATACCGGGCCGAGTCGACCCGGAGGTGGGCCGAACCGTTGCTCCAACTACCAGCTTCAGAAGGAGGGCAACTAGAAGAACTGACACAAGAGGACACACACTACTCTCAAACAGTCTCCACCATCCTCCACAACCAGTCCATCCGGTGGGCCCAATCACCCTCCGCCGACTACATCACCTACTCCTCCCAATCGGCTTTCGCCAAGTGGACCACCCGCTCAGACCACCAGCACGACCTCCTCCAGGCGGACGGCACCTCACAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTTCCTCCACGCCAAATACCAAGACGACACCCCACGCGAAGGCTCCGACCCCGCCACGCGCCTCCGCGCAAAGCCAACGCCGCAAGACGAGCTCAGCGCCAACCACGTGCTGGCGGAGAGGCGGCGGCGGGAGAAGCTGAACGAGAGGTTCATCATACTGAGATCTCTGGTGCCCTTCGTGACAAAAATGGACAAGGCATCCATATTAGGGGACACCATAGAGTACGTGAAACAGTTGAGGAAGAAGATACAAGAGCTTGAGGCGCGTAACAGGCAGATGGAGACAGATGAGCAAGAGCAGAGTAGGAGGGTGGTGGAGAAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATGAGGAAGCCGAAGTCGGTGGAGGCGTCGTCTCCGCCGCAGGGGGTGGTGACGTCAGTGCAGGTGTCGATAATAGAGAGTGATGCGCTGTTGGAATTGGAATGTGAGAAGAGGGAGGGGTTGTTGTTGGATGTGATGCAGATGCTGAGGGAGATGAGGATAGAGGTGACCACGGTGCAGTCCTCCATTAACAATGGGGTCTTCGTCGCCGAGGTGAGGGCCAAGGTGAAGGATAATCCCAATGGAAAGAAGACCAGCATCGTTGAGGTCAAGAGGGCCCTCAACCAGATCATACCCCACAATGATTGA 1692 0.5762 MEVSAEEASLQRSQQLRELYESLSAGETNPPARRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLAGANEVDSKTFSRAILAKVQEDLNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTAIYSAVDPTPATPAAANNHINEDDEDEDDEDEAESDSEAETARNSRPTCTPEASGVAVATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPTDHERRADSYRAESTRRWAEPLLQLPASEGGQLEELTQEDTHYSQTVSTILHNQSIRWAQSPSADYITYSSQSAFAKWTTRSDHQHDLLQADGTSQWLLKYILFTVPFLHAKYQDDTPREGSDPATRLRAKPTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQELEARNRQMETDEQEQSRRVVEKRKMRIVEGSGGMRKPKSVEASSPPQGVVTSVQVSIIESDALLELECEKREGLLLDVMQMLREMRIEVTTVQSSINNGVFVAEVRAKVKDNPNGKKTSIVEVKRALNQIIPHND 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2489 563 MobiDBLite consensus disorder prediction 114 194 - -
Mibi06g2489 563 Pfam Helix-loop-helix DNA-binding domain 376 423 IPR011598 GO:0046983
Mibi06g2489 563 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 96 IPR025610 -
Mibi06g2489 563 PANTHER TRANSCRIPTION FACTOR TT8 1 561 - -
Mibi06g2489 563 SMART finulus 379 428 IPR011598 GO:0046983
Mibi06g2489 563 Coils Coil 412 446 - -
Mibi06g2489 563 MobiDBLite consensus disorder prediction 350 372 - -
Mibi06g2489 563 Gene3D - 368 440 IPR036638 GO:0046983
Mibi06g2489 563 MobiDBLite consensus disorder prediction 157 173 - -
Mibi06g2489 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Mibi06g2489 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 446 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2489 Mibi-ChrMibi06 45141703 45146550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2489 213 562 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.563 6.38e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi06g2489 bHLH-MYC_N 4.9e-16 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2489 06 45141703 45146550 Mibi06g2489 06 45141703 45146550 ECH