Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2434 ATGATACGTAGACGAGAGGGGGCTGATTTTGCTGATAACAAAACGATGGTGAATCAGGTCGTCAAAGTGAGGAGGGAAACTCTTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGACGCCACCACCATATCCGAATGTCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATTACAGACGAGGAATTAGAACAATGTCCTATCTGTAATATTGATCTGGGTTGTGTACCACTTGAGAAATTGAGGCCAGACCACAATTTACAAGATGTTCGAGCTAAAATTTTCCCTTTGAAAAGAAGAAAGGCTAAAACACCTGAGGCTGTTCCCTCTATAACAATACCAGCTAGAAGAAAAGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGGGTATCAACACACGTAACCATGACTGGGAGAAGAACAAAACCTACCAGAAAGGCCAGTGGTTTGCGAGCCTCCAGTTTTTCCATTGAGAAGCCGATTAAAAAAGAGGAATCAGTGGAAGATCATACAGAGAGTTCAAGCTCGCCAGACACTTTGAACAAGTTTACACAGAATACCAGACAGAGTTTGCCCCCTCTTGAGTCTAACCAATCCTTACACACCAAAGAGGCAGATAATGGAGCGGAACCATGGGAAGCGAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTGGCAAGTAGGAGTAAGTGTTTCAAGTCTAGTGTGCAAGGGTCTGATGCTAAACCAGAACCCGTGCAAATAAATGAGAATGACTCTCAAGTGCAGAAATCCAAGATTAAAGAGACTAAGCGCAAAGCTAAAGTTGAGACTGAAAAAGTGGACACTGATCCTATCTCTTTAAATACAGAAAAGCCTAATAGATCACGTAAAGTTCGTCGTAAAAGGGAGCCTACTTTTGGAGAACCAGGCATATCACCTCAAGCTGTTTTGGACGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTTGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCACTCATGCCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCTGTATCATTTATCCAAAAATACCTAATGAAGAAACTAGAGCTGAGCAGTGAAACAGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACGCTACAACTGTGTAGTTTGGTTGACTTGTGGCTCCAGACGACATCTACGACACACCGAATTCCTGCAACAATTGGATCCTCAGCCAAGGATTTTGTAATGGTTCTAGCTTATACGCGCAAGGATCCACACCATTGA 1332 0.4242 MIRRREGADFADNKTMVNQVVKVRRETLVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELEQCPICNIDLGCVPLEKLRPDHNLQDVRAKIFPLKRRKAKTPEAVPSITIPARRKERSLSSLVVSTPRVSTHVTMTGRRTKPTRKASGLRASSFSIEKPIKKEESVEDHTESSSSPDTLNKFTQNTRQSLPPLESNQSLHTKEADNGAEPWEAKLDLWKPLNCLVEVASRSKCFKSSVQGSDAKPEPVQINENDSQVQKSKIKETKRKAKVETEKVDTDPISLNTEKPNRSRKVRRKREPTFGEPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDALMPQIPASYLRIKDGSLPVSFIQKYLMKKLELSSETEVEIKCMGQPVVPTLQLCSLVDLWLQTTSTTHRIPATIGSSAKDFVMVLAYTRKDPHH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2434 443 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Mibi06g2434 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 120 IPR013083 -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 129 214 - -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 245 264 - -
Mibi06g2434 443 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 245 316 - -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 180 211 - -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 129 158 - -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 265 297 - -
Mibi06g2434 443 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Mibi06g2434 443 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 17 440 IPR044807 GO:0004842
Mibi06g2434 443 SUPERFAMILY RING/U-box 28 98 - -
Mibi06g2434 443 SMART ring_2 34 74 IPR001841 -
Mibi06g2434 443 MobiDBLite consensus disorder prediction 164 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2434 Mibi-ChrMibi06 44581824 44587054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2434 18 362 C3H Transcription Factor Family AT2G30580 55.202 3.11e-116 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1642 02 16633080 16638218 Mibi06g2434 06 44581824 44587054 CCT