Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2427 ATGGCCACGGAAGAGCCCGCAGTTGTTCTCGAGTCCGTACCGGAGCCCGTCGTTACGGAGCCTGCCGAGGAGAAAGAGGCTGCAGATGCTGGTGCTGCCAAGACCAAGAAGGCCAAGGAGCCTAAGCCTAAGAAGCCTGCTGCCCCTAGATCCCGGAAACCTCATGCGCATCCTCCCTATGAAGAGATGATAAAGGACGCAATTGTGTCTCTGAAGGAGAGGACCGGTTCTAGCCAGCATGCTATCACCAAGTTTATGGAAGAGAAATACAAGGAGCTTCCCTCCAATTTTAGGAAGATTGTGTTGCAGCAATCAAAGAAGCTTGTGGCTTCTGGAAAGCTTGTCAAGGTCAAGGGTTCATTCAAGCTACCCTCTGTTACTAAGGCACCGGCATCGAAGGCATCTGGGAAATCTGCTCCGGCCAAGAAGCGTGCGCCTGCTAAGCCTAAGGCTAAACCAGCGGCTAAGCCTAAGGAGACGAAATCTATCAAGGCGGCGACTAAGTCGCGCCCTAAGACTAAGGCAGTCGCCAAGGCAAAGCCTAAAGTGGCTCCCAAGCCCAAGGCTGCTGCGGCCAAGCCCAAAGCTGCTGCAGCGAAGCCCAAGGCTGCTCCGGCGAAGCCCAAGGCCGCCGCCGCCAAGCCCAAAGCCGCCGCAGCCAAGCCCAAGGCTGCCGGAAGGCCCAAGCCCAAAGAGAGACCGGCCAAGGCGTCGAGGACATCGACCAGGACATCACCCGGCAAGAAGGCCCCGGCTCCTAAGGCGGCACCAAAGAAGGCTGCGGCGGCCAAGAAAGCTCCTGCTAAAGGCGTTAAGCCCAAAAGTGTAAAGTCTCCGGCGAAGAAGGCTGCTACAAAGAGAGGAAGGAAGTGA 873 0.5693 MATEEPAVVLESVPEPVVTEPAEEKEAADAGAAKTKKAKEPKPKKPAAPRSRKPHAHPPYEEMIKDAIVSLKERTGSSQHAITKFMEEKYKELPSNFRKIVLQQSKKLVASGKLVKVKGSFKLPSVTKAPASKASGKSAPAKKRAPAKPKAKPAAKPKETKSIKAATKSRPKTKAVAKAKPKVAPKPKAAAAKPKAAAAKPKAAPAKPKAAAAKPKAAAAKPKAAGRPKPKERPAKASRTSTRTSPGKKAPAPKAAPKKAAAAKKAPAKGVKPKSVKSPAKKAATKRGRK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2427 290 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi06g2427 290 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi06g2427 290 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi06g2427 290 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi06g2427 290 PRINTS Histone H5 signature 146 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mibi06g2427 290 MobiDBLite consensus disorder prediction 152 166 - -
Mibi06g2427 290 MobiDBLite consensus disorder prediction 119 290 - -
Mibi06g2427 290 CDD H15 56 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g2427 290 Pfam linker histone H1 and H5 family 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g2427 290 Gene3D - 52 144 IPR036388 -
Mibi06g2427 290 MobiDBLite consensus disorder prediction 18 47 - -
Mibi06g2427 290 PANTHER HISTONE H1 25 270 - -
Mibi06g2427 290 MobiDBLite consensus disorder prediction 167 181 - -
Mibi06g2427 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g2427 290 SUPERFAMILY "Winged helix" DNA-binding domain 53 134 IPR036390 -
Mibi06g2427 290 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g2427 290 MobiDBLite consensus disorder prediction 275 290 - -
Mibi06g2427 290 MobiDBLite consensus disorder prediction 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2427 Mibi-ChrMibi06 44546909 44547892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2427 58 125 Single Myb Histone (SMH) Gene Family AT1G72740 33.824 1.34e-06 47.0