Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2408 ATGGCTACCTCAGACTCTGCTTTACCAGTATTCGCCATCGTCGTTCTCAGCATCATGGCCACGGCTTTCTTGCTCATCGGCTACTTCACCTTCGTCACCAAATGCTGCTCTTACTGGCACCACCTCAACCCTCTCACATGGCTTTCCGTTCTGCGTCCCAGACACAGTGAAGAACCCTTCATAGCTCTCTCCCCCACCTTGTGGAATCGTGGCCTTGATGAATCTATCATCCGAGAAATACCCACATTCCAGTTCGTCAAAGGTGAGAATCATGGTCGTAGTGTGAGTACTGTGTATGGTTGTGTGGTTTGTTTGAGTGAGTTTCAGCAACTGGACGTGCTCAAAGTTCTTCCCAAATGTAGCCATGCTTTTCACTTGGACTGTATCGATATTTGGCTGCAGAGCAATGCCAATTGCCCCCTTTGCAGATCAAGCATCTCTGGCACCACGCGTCCTCCACTGGATCATATTATAGCACCAAGCTCTTCTCCTCAAGATTCTCAGTTACTCTCTAATATGGGTAGTGATGAGGACTTTGTGGTCATTGAATTGGGAGGAGAAGGTGGTGGGGGTTCTCTGTCTCTGAGGCAACATGAACGAAATCTGTCAAGTTGGGGAAGCTTGGAACAGAGTAGAAGTCATTCTGCTAGGAAGATGGAGCTGAAGCTCGGCCATTTGAAATTTAGGAAGTGGCAGCACGTGTCTATCATGGGAGATGAGTGTATTGATACGAGGAAGAAAGATGAACAGTTCTGTATTCAGCCCCTTAGGAGATCTTTCTCCATGGATTCTGCAAATGATAGGCAAATTTACTTGGAAGTTCAGGCCATTCCTCAGCAGCCAAATAGGCCTCAGAACGATGCTAGTGGGAGTGAAGATAGTAACAATAATAGCAGAGGTCGAAGGTCTTTCTTTCCATTTCGTTATGGTCGAGGATCCAAAAACGCAGTGCTTCCTTTGGAGAATGAGGTCTGA 975 0.4697 MATSDSALPVFAIVVLSIMATAFLLIGYFTFVTKCCSYWHHLNPLTWLSVLRPRHSEEPFIALSPTLWNRGLDESIIREIPTFQFVKGENHGRSVSTVYGCVVCLSEFQQLDVLKVLPKCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRPPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEGGGGSLSLRQHERNLSSWGSLEQSRSHSARKMELKLGHLKFRKWQHVSIMGDECIDTRKKDEQFCIQPLRRSFSMDSANDRQIYLEVQAIPQQPNRPQNDASGSEDSNNNSRGRRSFFPFRYGRGSKNAVLPLENEV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2408 324 PANTHER RING-H2 FINGER PROTEIN ATL16 4 321 IPR044600 GO:0016567|GO:0016740
Mibi06g2408 324 Pfam Ring finger domain 101 143 IPR001841 -
Mibi06g2408 324 SUPERFAMILY RING/U-box 100 147 - -
Mibi06g2408 324 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Mibi06g2408 324 MobiDBLite consensus disorder prediction 276 307 - -
Mibi06g2408 324 MobiDBLite consensus disorder prediction 276 302 - -
Mibi06g2408 324 FunFam E3 ubiquitin-protein ligase ATL6 63 149 - -
Mibi06g2408 324 SMART ring_2 101 142 IPR001841 -
Mibi06g2408 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
Mibi06g2408 324 CDD RING-H2_PA-TM-RING 101 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2408 Mibi-ChrMibi06 44330940 44331914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2408 2 283 C3H Transcription Factor Family AT1G04360 45.277 1.60e-73 230