Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2396 ATGGATACCGCGTTGCCCTGGGAGTTTATCCTCAATTCATACCTCCGCTCACCTGCTGTCTCTGATACACACACCTCTGATTTAATTTTGCCTGGAGACTTTGGTTCAATTCCGCCCGTAAATCTCAGGACTGAAGCTAGGGTTTCGCACAACCCAATCATGCCGTCCCTCATTTCTCCCGGGAAAATCCATCGCCTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGTCCCTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGCAAGTCCAACCTTATGGACGCTATTAGCTTTGTGCTTGGTGTAAGGACGGGCCAGCTGCGTGGTGCTCAACTCAAGGACTTAATCTACGCGTTCGACGACAAGGAAAAGGAGCAGAAGGGACGGAGGGCGTTTGTTCGTTTGGTTTATCAGCTGGGTAATGGTTCGGAGATCCAGTTCACCAGGACTATCACCAGCGCCGGCGCCAGCGAGTACAGGATTGATGGCAGCACTGTAACGTGGGATGCCTATAATGCTAGACTCAAGTCACTTGGCATTCTTGTCAAGGCTCGCAACTTCCTCGTCTTTCAGGGTGACGTGGAATCCATTGCGTCGAAGAATCCGAAAGAGCTTACTGCCCTTCTTGAGCAGATATCCGGCTCTGATGAGCTCAAGAGAGACTATGAGCGACTTGAAGAAGAGAAAGCTACAGCTGAAGAAAAATCGGCCCTTGTTTTTCAGAAGAAGAAGACTGTTGTTATGGAAAGAAAGCAGAAGAAGGAGCAAAAGGAAGAAGCAGAGAAACATATTCGTTTGCAGGATCAATTGAGGACTATAAAGAAAGAGCATTTCTTGTGGCAATTGTTCAATATAGAAAGAGATATTGAAAAGGCAACTGATGATCTTGAGGATGAGAAAAGAAGTCGAGAAGGTGTTATGGAAGAACTGGAAAAATTTGAAGCTGAAGCTAGTAAAAAGAAGAAAGAACAGGCTAAATATCTGAAAGAGATTGCACAATGCGAAAGGAGGATTGGTGAGAAAAGCAACAAACTTGACAGGAATCAACCTGATCTTCTGAAGTTGAAAGAGGAAATGGCTCGTATTAACTCTAAAATTAAAAAAGGGAAGAAGGAGCTAGACAGAAAAAGGGAAGAACGGAGAAAACATGCTAATGATATAAAGGAGCTACAGAGGGGTGTACGAGATCTCACTGCCAAATTGGAAGATCTACAGGAAAAGAGTCGAGATGTTGGCGATGAACTAAAGTTGGATGGCAATGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTAAGGGAGGAGAAAGAACTTCTGGATAGGCAACAACATGCAGATAGTGAAGCTCAAAAAAATCTGGATGAGAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCGAGCTAGGCTGAAAAAAATTCTTGATAATTCTACAAAACATAAGGATGAGAAAGCAAATTTGGAGAAAGAACTGCGTGTGATGCAGGACAAACATCGAGATTCCAGGAAGAAATATGAAAATTTGAAGTTGAAAATTGGTGAAATAGAAAATCAACTTCGTGAACTGAGGGCCGATCGATATGAAAATGAGAGAGATGCAAAACTGTCTCAAGCGGTAGAGAGCCTCAAACGCCTGTTTCAAGGAGTACATGGTCGCATGACTGATCTATGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCCATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACGTTTATTCCTTTGCAATCAGTTCGTGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTGGTTTTTGATCGCAAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCTGTCGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGAGCTGGAGTGGTGAGAGGTTCAAAGTTGTAACTGTGGATGGAATTCTGCTTACAAAATCTGGCACAATGACTGGTGGAACTAGTGGTGGAATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCCTTAAGAAAAAGAAAGAGCAGTATGAAGCGGAGTTGGAAGAGGTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAGCATCTGGAAAGCTTAGTGGACTTGAAAAGAAAATTCATTATGCTAAGATTGAGAAGCAAAGCATTGATGACAAGCTGTCAAATTTGAAGAGAGAGAAAGAGATAATCAAAGAAGAAATCGAGCGGATTAGTCCAGAACTTCAGAAGTTAAATGGTATTGTTGATAAGAGGAGTGCGGACATACGTAAGCTGGAGAAGAGAATCAATGAAATTACTGATAGGATTTACAAAGATTTCAGCAAGTCTGTTGGGGTTGCTAACATTCGTGAGTATGAAGAAAATCAACTTAAGTCTGCTCAAAATGTAGCAGAGGAGAGGCTAAGCTTGAGCAGCCAGCTATCAAAATTAAAATATCAGTTGGAGTATGAACAAAATCGTGACATGACTACAAGAATTAGCGAACTGGAATCTTCTTTGAGTGCTCTTGAACATGACTTAGAACAGGTACAGCACAAAGAGGCTGAAACAAAGTTGGCAGCTGAGAAAGCTACCGAAGACATTAACCAGTTGAGGGAAGAAGTTCAGGAGTGGAAATCTAAGTCTGAAGATTGTGAGAAAGATATCCAAGAGTGGAAGAAGCGTGCTTCTTCTGCCACAACAAGCATATCTAAACTCAACCGTCAGATAAACTCAAAGGAGTCCCAGATTGAGCAATTAATTGTGCAGAAGCAAGAAATTGTAGAAAAGTGTGAACTAGAACAACTTAGCCTGCCAATTATAGAAGATCCAATGGATACTGGTACTTTAATACCAGGTCCAGTTCTTGACTTTGATCAACTAAGTAGGGCACTGAAGGATAGGAAGAACTCTGACAGAGACAAAATTGAGGTTGAGTTTAAGCAAAAACTGGATTCCCTAACATCTGAAATTGAAAGAACAGCACCAAATTTGAAGGCATTAGATCAATATGAGGCTCTGCTGGAAAAGGAAAGAGCTGTAGTTGAAGAGTTTGAAGCTGTTAGGAAAGAGGAGAGGGAGAAGGCTGATAAGTTCCGTGCAGTTAAGCAGAAGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCTGGTAATATAGATAAAATATATAAACAACTTACAAGGAGCAACACACATCCACTGGGTGGAACAGCATACTTGAACTTGGAAAATGAAGATGATCCATTTCTGCATGGCATAAAGTACACTGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAGCAGCTATCTGGTGGGGAGAAGACTGTTGCTGCACTTGCTTTGCTATTCTCTATCCATAGTTACAAGCCTTCACCTTTTTTCATACTGGACGAAGTAGATGCTGCATTGGACAACTTAAATGTTGCAAAGGTTGCTGGATTTATTCGTTCTAAATCTTGTGAGGGAGCAAGGGCTAATCAAGATGCTGATGGTGGCAATGGCTTTCAAAGTATTGTGATATCCTTGAAAGACACCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACCGTGACTCGGAGAGAAGCTGTTCGAGAACTCTGACGTTTGACCTGACCAAATACCGTGAGTCCTAA 3810 0.4199 MDTALPWEFILNSYLRSPAVSDTHTSDLILPGDFGSIPPVNLRTEARVSHNPIMPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSAGASEYRIDGSTVTWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYERLEEEKATAEEKSALVFQKKKTVVMERKQKKEQKEEAEKHIRLQDQLRTIKKEHFLWQLFNIERDIEKATDDLEDEKRSREGVMEELEKFEAEASKKKKEQAKYLKEIAQCERRIGEKSNKLDRNQPDLLKLKEEMARINSKIKKGKKELDRKREERRKHANDIKELQRGVRDLTAKLEDLQEKSRDVGDELKLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMRARLKKILDNSTKHKDEKANLEKELRVMQDKHRDSRKKYENLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDRKFDPALEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYEAELEEVGSIRDMHLKESEASGKLSGLEKKIHYAKIEKQSIDDKLSNLKREKEIIKEEIERISPELQKLNGIVDKRSADIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRISELESSLSALEHDLEQVQHKEAETKLAAEKATEDINQLREEVQEWKSKSEDCEKDIQEWKKRASSATTSISKLNRQINSKESQIEQLIVQKQEIVEKCELEQLSLPIIEDPMDTGTLIPGPVLDFDQLSRALKDRKNSDRDKIEVEFKQKLDSLTSEIERTAPNLKALDQYEALLEKERAVVEEFEAVRKEEREKADKFRAVKQKRYELFMDAFNHISGNIDKIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARANQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2396 1269 Coils Coil 360 422 - -
Mibi06g2396 1269 FunFam Structural maintenance of chromosomes 1A 62 277 - -
Mibi06g2396 1269 Gene3D - 549 630 - -
Mibi06g2396 1269 SMART SMC_hinge_2 570 685 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mibi06g2396 1269 Coils Coil 810 830 - -
Mibi06g2396 1269 CDD ABC_SMC1_euk 63 210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mibi06g2396 1269 SUPERFAMILY Smc hinge domain 534 734 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mibi06g2396 1269 Coils Coil 727 747 - -
Mibi06g2396 1269 Coils Coil 1056 1083 - -
Mibi06g2396 1269 Gene3D - 285 433 - -
Mibi06g2396 1269 Gene3D - 631 712 - -
Mibi06g2396 1269 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 62 1269 - -
Mibi06g2396 1269 Coils Coil 775 795 - -
Mibi06g2396 1269 CDD ABC_SMC1_euk 1148 1263 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mibi06g2396 1269 Pfam SMC proteins Flexible Hinge Domain 570 683 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mibi06g2396 1269 Coils Coil 290 345 - -
Mibi06g2396 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 321 IPR027417 -
Mibi06g2396 1269 PIRSF SMC 61 1265 IPR024704 GO:0005524|GO:0016887
Mibi06g2396 1269 Gene3D - 1009 1268 IPR027417 -
Mibi06g2396 1269 Gene3D - 61 276 IPR027417 -
Mibi06g2396 1269 Coils Coil 465 555 - -
Mibi06g2396 1269 Pfam RecF/RecN/SMC N terminal domain 63 1251 IPR003395 -
Mibi06g2396 1269 Coils Coil 216 278 - -
Mibi06g2396 1269 Coils Coil 881 985 - -
Mibi06g2396 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1260 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2396 Mibi-ChrMibi06 44213290 44222587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2396 60 382 Structural Maintenance of Chromosomes family AT5G15920 25.538 7.06e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2396 06 44213290 44222587 Mibi06g2396 06 44213290 44222587 ECH