Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2391 ATGAAATTGAATGGTCGAGACCTGACCGAACCTAGAAGCAAGCAAGGGTTCTTGTTCTTGGCAATTGAACCTGGTAATTTTATGAGATTGAAATTGGCCGTGGGAAATAATATTATGGAGGAAGACGAAGACAGAATTTTGCTTAATAGTTTGGGCGTAGAGTCTGCCAACCACGAATGCATCGAAAGAGATGTACTAGCTGAGGCCCAGAATGATGTGGTGATCATTACTGAAGCTGATGGGAGCTCAAAAGTAGAATCTCCTCAGAAATATGAAAATGTTGATCCATCATCTAGTAGTAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAAATGAAAAATGTTGATAGTAATGGAGATTGTATTGATGGTGATGCTGCCAATGGGGAGCAAGGGATTACCAAGGATACTTCCTCCAATGATTTGAATATTCAACATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAACTTTCAGGTTTGTTCAAGGAGAAGCCTTGCAAAAGTATTGATCAGGACAAAGAGAACGAGATTTTTGATTTGGTTAAGGAAGATCGAAGATCCAAGAGGAAGCCTAAAGAAGTTAAAAGTTTGCCAAAAGGCTCAGGGAAACGGCATAAAACAGTTTCATTTAATGATGATGTTGATTTTGATGCAATTTTAGATGCTGCCTCAGCAGGCTTCGTTGAGACAGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAGCGTCGCTTTCAACAATCAGAAACATCTAGCAGTCATGGTGCGAGTCAAGAAGAAAAGACAGACGATCTTGCTTCTTCTAGTATTGAAAGAGCTGCCCAGACAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGTAGATCTGCCGAAGCTTGATGCACCCACTCGTCCTTTTGTCAGACTCAAAGTACCACTAAAACAAAAACTTCCTCAGTCCCAAGAAAGAGAGCTAGAAAAAAAAAATAATTTGAAAAGGAAAAGAAGGCGACCTTTGCCTGGTGCGAAATGGACAGAGCGTGTCTCTAGTGAGGAAATACATTCAATAGGAACTGAGGAAGCAAGTGGTTGCCTGGACCCTTCCAGCTGTGAAAATTTAGATGCTCAGGATTTTGATGGTGCTGATCATGATCCTTCTTTTATAACTTTAGAAGGTGGGCTGAAAATCCCTGATAATGTTTTTGATGCATTGTTTGACTACCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGGGATGAGATGGGTCTTGGCAAAACCATCCAGATCATATCCTTTCTTGGTGCATTGCATTTTAGTGGCATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTCTTGCGACAGTGGAAAAGGGAAGTTAAAAAATGGTACCCAAAATTTCATGTAGAGCTCTTACATGATTCTGCACGAGATCCTGATGTTAGAAAGAAGAAATCCAAATGTGATGAATCAGACTATGATAGTAATAGTTCAAGTGACAGTGACTATGAGATCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATTAGTCGTGTAATGAGAACGGAATCTGGATTGCTTATCACAACCTATGAGCAGCTCAGAATAGTGAGGGACCTGTTACTTGACATTGAATGGGGTTACGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAGTCACCCTAGTTTGCAAGCAGCTACAGACTGTACACCGCATCATAATGACTGGATCTCCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCTGCTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGAGGATGAAAGCAGATGTGGATGCTCATCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGCCTTACTACTGAGCAAGTGTCTGCTTATAGAGCTTTTTTGGCAAGCTCTGAAGTGGAGCAAATTTTGGATGGACGGAAGAATTCTCTTTATGGAATTGATGTGATGCGTAAGCTTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTCAGAAATCCAGACTATGGAAATCCAGAGCGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTTTTTACTCAGACCCAACAAATGCTTGACATTATTGAGAATTTTTTGACCACTTCTGGTCATAATTACCGGAGAATGGATGGAGTCACTCCCATAAAGCAAAGGATGGCTTTAATTGATGAATTTAATGAATCAAAGGAAGTATTTATATTCATTTTAACAACCAAAGTTGGGGGCTTGGGGACGAATCTTACTGGTGCAGACAGGGTAATTATCTTTGACCCTGATTGGAATCCTTCAACTGATGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTAACAGTATATAGGTTGATCACACGCGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATATACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAGAGCTCGAGATATGAAAGATCTTTTTACACTGAATGTGGATGACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATATCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGAGAAGCATAAACATCCCCAAACTGCTGAACTAGGTTCTGATGATGTTGTAGTTAATAGCGATGGCAGGTCAAAAACAAGATCAGTCAAGGGAAAGGTAAAAGAGGAAACAAATCGTCTGGATGAACCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCGCATGGGTTACATAGTGCTGTGAACCATGACTTGATCATGAATGCCAATGATGAGGAAAAGATGAGGCTTGAGGAGCAAGCTTCCCAGGTTGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCAGAAGTCGTGACAGCATCGCTGTTCCTACATGGACAGGCAGGTCAGGGACTGCTGGTGCACCATCATCTTTTCGTCGGAAGTTTGGTTCAACTGTGAATTCACAGTTGGTAAATAATTGCAAAGAATCTGATGAATTGACTGGTGATAGAACTAGAAAATTAAATGGATATGCTGCTGGGGCATCTTCTGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCAAATCCGGGGTAACCAAGAAAAGGCCATCGGTGATGGCCTTGATCATCAGTTTGGTATGGCTGTTAACGTATCTAATCAAGCAAGATCTGTGGATGTTGGGTCCTCTAGGGCTTCTAAAAAAGTTGATGGGGTGCAACCTGAGGTATTGATTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTCGGTCTGATTCGTCCTGCATTGTCCAGCATTTTAAGGACAGGATACCGTCAACGGATCTTGCGTTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAAGGGCCTAACAGATCACATTGGATTCTGAAGCCAGACTATCAAGAATAA 3801 0.4115 MKLNGRDLTEPRSKQGFLFLAIEPGNFMRLKLAVGNNIMEEDEDRILLNSLGVESANHECIERDVLAEAQNDVVIITEADGSSKVESPQKYENVDPSSSSKAELYHKLRAVDFEINAVASTIQQMKNVDSNGDCIDGDAANGEQGITKDTSSNDLNIQHVLAADRLESLKKTKAQLEKELSGLFKEKPCKSIDQDKENEIFDLVKEDRRSKRKPKEVKSLPKGSGKRHKTVSFNDDVDFDAILDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETSSSHGASQEEKTDDLASSSIERAAQTMSEAARARPTTKLLESVDLPKLDAPTRPFVRLKVPLKQKLPQSQERELEKKNNLKRKRRRPLPGAKWTERVSSEEIHSIGTEEASGCLDPSSCENLDAQDFDGADHDPSFITLEGGLKIPDNVFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQIISFLGALHFSGMYKPSIIICPVTLLRQWKREVKKWYPKFHVELLHDSARDPDVRKKKSKCDESDYDSNSSSDSDYEINIQSKSTRKWESLISRVMRTESGLLITTYEQLRIVRDLLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAAPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAHLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKLCNHPDLLEREHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTTSGHNYRRMDGVTPIKQRMALIDEFNESKEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFRARDMKDLFTLNVDDKSGSTETSTIFSQISEDVNIVGAHEDKQEKHKHPQTAELGSDDVVVNSDGRSKTRSVKGKVKEETNRLDEPDEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQASQVAQRAAEALRQSRKLRSRDSIAVPTWTGRSGTAGAPSSFRRKFGSTVNSQLVNNCKESDELTGDRTRKLNGYAAGASSGKALSSAELLAQIRGNQEKAIGDGLDHQFGMAVNVSNQARSVDVGSSRASKKVDGVQPEVLIRQICTFLQQRGGRSDSSCIVQHFKDRIPSTDLALFKNLLKEIATLEKGPNRSHWILKPDYQE 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2391 1266 Pfam SNF2-related domain 438 760 IPR000330 GO:0005524|GO:0140658
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 1004 1022 - -
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 277 320 - -
Mibi06g2391 1266 FunFam Protein CHROMATIN REMODELING 8 413 695 - -
Mibi06g2391 1266 FunFam DNA excision repair protein ERCC-6 703 981 - -
Mibi06g2391 1266 SMART ultradead3 431 654 IPR014001 -
Mibi06g2391 1266 Pfam Helicase conserved C-terminal domain 785 892 IPR001650 -
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 205 229 - -
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 523 544 - -
Mibi06g2391 1266 SMART helicmild6 809 892 IPR001650 -
Mibi06g2391 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 646 IPR014001 -
Mibi06g2391 1266 Coils Coil 1048 1075 - -
Mibi06g2391 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 696 IPR027417 -
Mibi06g2391 1266 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 783 942 IPR001650 -
Mibi06g2391 1266 PANTHER SNF2/RAD54 FAMILY MEMBER 211 1247 - -
Mibi06g2391 1266 Gene3D - 702 992 IPR027417 -
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 349 383 - -
Mibi06g2391 1266 Coils Coil 159 186 - -
Mibi06g2391 1266 CDD DEXHc_ERCC6 435 645 - -
Mibi06g2391 1266 Gene3D - 419 695 IPR038718 -
Mibi06g2391 1266 MobiDBLite consensus disorder prediction 995 1022 - -
Mibi06g2391 1266 CDD SF2_C_SNF 778 903 - -
Mibi06g2391 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 957 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2391 Mibi-ChrMibi06 44118765 44124986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2391 735 946 RAD5 or RAD16-like Gene Family AT5G22750 31.163 2.86e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi06g2391 SNF2_N 1.2e-61 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2391 06 44118765 44124986 Mibi06g2391 06 44118765 44124986 ECH