Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2318 ATGGATCACGTAGCATCAATTAAGCAACAAAGCAGATTCGAAGACATAGCAAAGTGTCTGATAATGCTGTCTACCCAATATGGAGAAACCAACGTTATGAGATCGAAGCCTCAAAACGACGTCGTAGGGTGTGTGGAATATGAGTGCAAGACATGCAAACGCAAGTTCTCGTCATTTCAGGCCCTTGGAGGGCATAGGGCTAACCACAAGAGACCAAGGCTAGAGGGAGATCAGGAGCTAAGGGCTCAAGCTAAGTCTCTGAGCTTAGGAACTCGTGGACCCAAAGTTCATGAGTGTTCCATTTGTGGTATGGAGTTTTCGCTAGGCCAAGCACTAGGTGGCCACATGAGAAGACATAGGTCATCAGCCACCCAAAACGACGACGTTTCAAACCATCGATTCTCTTCAAAAGTGCCAGTCTTGAAGAGATCAAATAGTAAGAGGGTTGAATTCTTGGATCTTAACTTGACGCCTCTCGAGAATGACTTGAAGCTATTGTTTGGTAACAAGGCACCTAAGGTTGATGCGTTCGTCGTCTGA 540 0.4593 MDHVASIKQQSRFEDIAKCLIMLSTQYGETNVMRSKPQNDVVGCVEYECKTCKRKFSSFQALGGHRANHKRPRLEGDQELRAQAKSLSLGTRGPKVHECSICGMEFSLGQALGGHMRRHRSSATQNDDVSNHRFSSKVPVLKRSNSKRVEFLDLNLTPLENDLKLLFGNKAPKVDAFVV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2318 179 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Mibi06g2318 179 Pfam C2H2-type zinc finger 47 72 - -
Mibi06g2318 179 Pfam C2H2-type zinc finger 96 121 - -
Mibi06g2318 179 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Mibi06g2318 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Mibi06g2318 179 SMART c2h2final6 47 69 IPR013087 -
Mibi06g2318 179 SMART c2h2final6 97 119 IPR013087 -
Mibi06g2318 179 Gene3D Classic Zinc Finger 44 119 - -
Mibi06g2318 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Mibi06g2318 179 PANTHER ZINC FINGER PROTEIN ZAT5 8 162 - -
Mibi06g2318 179 SUPERFAMILY beta-beta-alpha zinc fingers 47 119 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2318 Mibi-ChrMibi06 43466790 43467329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2318 8 179 C2H2 Transcription Factor Family AT2G37430 47.849 1.83e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi06g2318 zf-C2H2_6 4.9e-10 CL0361