Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2310 ATGGCGCTCAAGAAAAGCTTATATATCACCACGGGAATCATAGCGAGAAGCAACATTGGCTCGAGAAAGCTCCTTGAGGCGTACCTTATATATCAGCTTCCACATGGAATGGAAGAGCATCGCCATCGCCGAAACCGGAAAAGAGGATTCGTCGGAATGGCAAAGCCAACCCTCAGAGAGATGAGTGAGACTTGTTGGGCGCGCAAGCGAGACCCGTTTCATGCCGCCATTGAAGTTGGAAAATTCCTTCATATTTCTAAATTCGCAACAAAATCAAAACGTGTGGCTACCCAATTAATGGGGAATTCAATCGGCCATCGCAAACACCATAATTCTGCTCCTCACTACCCCCAACCTCCCTCCTATATATATCCAGCTCCGCCTCATCTTCCAACCCCATTTTCAGCTCCTCCTCCTCCTCACGGCCATTTCGCCTCCGGAATGATCTCTTTACCTTATTCCCACGTCGATTCCTGTTTGCGTGCTCTCGCCGCCCAAGCTGAAGGCTTTGGTCGATGTGCCATCGGTGGCCTTCATGGCCCCCTTTATCACGTCACCACCTTAGCAGATGATGGACCAGGATCACTCCGGGACGGTTGTCGCAGAAAAGAACCATTGTGGATTGTATTTGAGGTTTCTGGAACTATCCATCTTTCATCTTACTTGAGTGTCTCATCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACCGGAAAGGGTTTGCGGTTGAAGGAATGTGAGCATGTAATAATTTGCAACTTAGAGTTAGAAGGTGGTAGAGGGCCTGATGTAGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGACCGTTGCAGCCTCCGTGATTTTGATGATGGACTGATAGATATTACACGAGAAAGCACTGATATTACTATTTCTAGATGCCATTTTTCTCAGCATGACAAAACAATGCTTATTGGGGCAGATCCCTCACACATTGGTGATAGATGCATGAGGGTGACTATTCACCACTGTTTCTTTGACGGGACACGACAGCGGCATCCTCGTGTTAGATTTGCAAAAGTACATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCGAGTGTGGAATCACAGATATTCTCACAACACAACATCTATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCAGGAGACAAGGAGGGAGAAGCAAGTGGTCACATATGGTCAGAAGGAGACATGTTCATAACTGGAACGAAGGCGGGCTTAATGGGGGAGAGCGTGGGAGCTCCCACATTTCATCCTACTCAACACTACACAACGTGGACAGTGGCACCTCCCTCAGAAGATCTCAAACAGCTTCTTCATCACTGCACTGGATGGCAATGTGTACCCCGCCCACCAGATCACCCCCTGCCTTCATAG 1437 0.4704 MALKKSLYITTGIIARSNIGSRKLLEAYLIYQLPHGMEEHRHRRNRKRGFVGMAKPTLREMSETCWARKRDPFHAAIEVGKFLHISKFATKSKRVATQLMGNSIGHRKHHNSAPHYPQPPSYIYPAPPHLPTPFSAPPPPHGHFASGMISLPYSHVDSCLRALAAQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDAIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHIGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAGDKEGEASGHIWSEGDMFITGTKAGLMGESVGAPTFHPTQHYTTWTVAPPSEDLKQLLHHCTGWQCVPRPPDHPLPS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2310 478 PRINTS Pollen allergen Amb family signature 368 387 IPR018082 -
Mibi06g2310 478 PRINTS Pollen allergen Amb family signature 166 183 IPR018082 -
Mibi06g2310 478 PRINTS Pollen allergen Amb family signature 221 237 IPR018082 -
Mibi06g2310 478 Pfam Pectate lyase 222 384 IPR002022 -
Mibi06g2310 478 Gene3D - 153 458 IPR012334 -
Mibi06g2310 478 SUPERFAMILY Pectin lyase-like 166 468 IPR011050 -
Mibi06g2310 478 PANTHER PECTATE LYASE 18-RELATED 157 432 IPR045032 GO:0030570
Mibi06g2310 478 SMART amb_all 213 391 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2310 Mibi-ChrMibi06 43387136 43392191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2310 188 477 Polysaccharide Lyase AT3G55140 74.828 1.13e-166 470
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2310 06 43387136 43392191 Mibi06g2310 06 43387136 43392191 ECH