Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2280 ATGAAACCGCCAGCATTCAAGTGGCGGGGGGGAGAGAGAGACGTCCGATCGCTCTTCGTTCTCACCGATCCTTCCCTCTTTAAACTCGCGCCAATTCCAACTTCTCTCTTTCCTTTCAGGGTTCCGGCGACCATGTCTGATGCTCCGGCCAGTCCAGGCGGTGGCAGCCATGACAGCGGTGACCATAGCCCTCGCTCTAATGTCCGCGAGCAGGATAGGTTCCTTCCCATCGCTAACATCAGCCGAATTATGAAGAAGGCACTCCCTCCTAATGGCAAAATAGCCAAGGATGCCAAGGAGACTGTCCAGGAATGTGTCTCTGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGAAAGACAATTAATGGTGATGATTTGCTTTGGGCCATGGCCACTCTAGGTTTCGAGGATTATATCGATCCCCTGAAGATTTACCTGGCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGGCGGAGACACATCGACCAAGAAAGATGTTCAACCTAGTCCTAATGCTCAGCTTGCCCATCAAGGTTCTTTCCCCCAAGGTGTTAATTACACAAATTCTCAGGCTCAACATATGATGGTTCCTACGCAGGGTCCAGAATAG 642 0.5047 MKPPAFKWRGGERDVRSLFVLTDPSLFKLAPIPTSLFPFRVPATMSDAPASPGGGSHDSGDHSPRSNVREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKGGDTSTKKDVQPSPNAQLAHQGSFPQGVNYTNSQAQHMMVPTQGPE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2280 213 MobiDBLite consensus disorder prediction 47 70 - -
Mibi06g2280 213 SUPERFAMILY Histone-fold 71 173 IPR009072 GO:0046982
Mibi06g2280 213 Gene3D Histone, subunit A 60 202 IPR009072 GO:0046982
Mibi06g2280 213 MobiDBLite consensus disorder prediction 161 213 - -
Mibi06g2280 213 MobiDBLite consensus disorder prediction 171 207 - -
Mibi06g2280 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 138 IPR003958 -
Mibi06g2280 213 ProSitePatterns NF-YB/HAP3 subunit signature. 105 121 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mibi06g2280 213 FunFam Nuclear transcription factor Y subunit B-3 63 187 - -
Mibi06g2280 213 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Mibi06g2280 213 PRINTS CCAAT-binding transcription factor subunit A signature 140 158 - -
Mibi06g2280 213 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Mibi06g2280 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 60 190 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2280 Mibi-ChrMibi06 43135433 43138483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2280 51 211 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.059 8.18e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi06g2280 CBFD_NFYB_HMF 1e-27 CL0012