Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2273 ATGGCCAACGGCTCTTCTTTTTTGTTTTCCGGCATTCGCTTCGATAAAAAGAGGTTCGGCACCGACATTGCTAAGTTTGAGAAAAAGGAAAACGATCATTCCGTGAAGGTTTCGAGCTCAGTTGAGATCGAGAAAGCAGAACCAGTTGATGGAAAAGCGCCTGCGAAGAAGCAGAAGCGGAAGGGAGTGGTTTCAGTTGAGGGATTTAATGTCTTTAAGAAGTCCAAATCAGAGGCACTTCAGCCTAAAGATGAAGATAAAGCTGTGGTTGACTCCGCTCAGCAGACCAAAGAACACAATAGGCAACTTGAGCGGGATGCTCTGTTCAGGAAGAGGCACAATATTCATGTGTCTGGGTACAATGTCCCATCTCCGCTTCAAAATTTTAAAGAGTTGAGATCAAGATATAAATGTGAACCATATATGTTGCGCAATCTGGCAGAACTCGGATTCAGAGAACCAACACCAATCCAAAGACAAGCTATTCCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAAACCTTGGCATTTGTGTGTCCCATGCTTATAAAGCTTAAGGAACCTTCAAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAAAAGCTGGCTAAAGGAAAAAAGTTCCGTGTTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTACTAAATTGTCATGTGATATACTTATATCCACACCACTTCGATTACACTTGGCTATCCGGAGGAAAAAGGTTGACCTTAGCAGAGTTGAGTATCTTGTCCTGGATGAATCTGATAAACTTTTTGAGCTTGGGTTATTCGAGCAGATTGATTCTGTTATTCAAGCATGTTCAAACCCTTCAATAATACGCTCACTTTTTAGTGCCACTTTGCCTGATTATATCGAGGATCGTGCTCGGGAGCTTATGCATGATGCCATTAGAGTTATTATTGGCAGAAAGAATATGGCTTCTGAAACGATAAAGCAAAAGTTAGTTTTTACTGGAAGTGAAGAGGGAAAACTTATGGCCATTCGCCAAAGCTTTGCGGAGAGTTTAAATCCCCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAACTCTATGGTGAACTACAATTTGACGACCTTAGAGTTGGCGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATAATTTCAGAGCGGGAAAAACATGGGTTTTGATTGCCACTGATGTAGTTGCTCGAGGAATGGATTTCAAAGCTGTGAAATGTGTGGTTAACTATGATTTTCCAGATTCTGCTGCTGCCTACATCCATAGGATTGGTCGTTCTGGGAGAGCAGGGAGAGCGGGAGAAGCTATAACATTTTATTCAGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATGTGATGGCAACATCAGGTTGTGAAGTTCCACCTTTTCTTTTGGAGCTGCCCAAAAAGAAGTGGAAGAAACATCGTCCCAGAAGAGATTCTATCTCTACCAAACCCAAAGTATAA 1575 0.421 MANGSSFLFSGIRFDKKRFGTDIAKFEKKENDHSVKVSSSVEIEKAEPVDGKAPAKKQKRKGVVSVEGFNVFKKSKSEALQPKDEDKAVVDSAQQTKEHNRQLERDALFRKRHNIHVSGYNVPSPLQNFKELRSRYKCEPYMLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKEPSKNGIRAVILCPTRELSSQTYRECKKLAKGKKFRVKLMTKELARNGDFTKLSCDILISTPLRLHLAIRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDYIEDRARELMHDAIRVIIGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELQFDDLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVVNYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANVMATSGCEVPPFLLELPKKKWKKHRPRRDSISTKPKV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2273 524 Gene3D - 106 339 IPR027417 -
Mibi06g2273 524 CDD DEADc_DDX52 143 335 IPR044764 GO:0003724|GO:0005524|GO:0030490
Mibi06g2273 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Mibi06g2273 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Mibi06g2273 524 Gene3D - 340 517 IPR027417 -
Mibi06g2273 524 MobiDBLite consensus disorder prediction 37 60 - -
Mibi06g2273 524 SMART helicmild6 384 465 IPR001650 -
Mibi06g2273 524 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Mibi06g2273 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 504 IPR001650 -
Mibi06g2273 524 Pfam Helicase conserved C-terminal domain 367 465 IPR001650 -
Mibi06g2273 524 SMART ultradead3 150 347 IPR014001 -
Mibi06g2273 524 CDD SF2_C_DEAD 344 474 - -
Mibi06g2273 524 MobiDBLite consensus disorder prediction 77 97 - -
Mibi06g2273 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 485 IPR027417 -
Mibi06g2273 524 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2273 Mibi-ChrMibi06 43093929 43098341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2273 142 503 Eukaryotic Initiation Factors Gene Family AT3G19760 32.143 1.85e-57 195