Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2258 ATGCACAAAATGATTTCTGTTTCTGACCCTTTCTCCTTATCCACTCCCATCGGAGGCTTTCCCCCTCCTCCTCCACAACAACAACAAAGCTCAAACCCTAACCCTAAACCTAATCCTAAGAAGAAAAGGAATCTCCCTGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTTTCGCCGAAGACTCTCATGGCAACCAACAGGTTCATCTGTGAGATATGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAACTTCACCGGAGGGGTCACAACTTGCCATGGAAGTTACGGCAGAGGTCAAACAAGGAAGTTCGTAAGAAGGTTTATATCTGCCCGGAGAAGGCCTGCGTCCACCATGACCCCTCAAGAGCACTAGGTGACCTTACCGGAATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAATGTTCCAAGAAATACGCCGTTCAATCTGACTGGAAGGCTCACACCAAAACCTGTGGCACAAGAGAATACAAGTGTGATTGTGGCAACCTATTCTCCAGAAAGGACAGCTTCATTACACACAGAGCTTTCTGCGACGCCTTAGCAGAAGAGAGTGCAAGACTCACCACAGTTCCTCCAACAAATCTGAATATCAAGAACGAAGCCATTACCTCATCACAACAAACTCACAACCTGGGAATTGACAACAACGCAGACATAATTTCCCAATTTGGTTTCAATAATGGAATGGGAATGGGTTCGGAGCAGCAAAGAGCAAGCTTATCAATGTGGTTGAACCAAGGAAACAACAGCAGCAATAGTAACAATGGTTTTGATGTGGGAGCACTATACGGTTCTTCAGGTTTGGGTGAGCATATGGTGACACAAATGACAACGAACCAAGCTAATAATAGTGCTTTTGGGGGGTCTTGTAATTTTGGGATAGCTACTTCGAATTCAACAACAAACGTAGGTCTGTTACTACCAAGTGGGAAAAGGAGTGAAGCAATGTCAAAGGCAGCTTCTCCCATGTCAGCCACTGCTTTACTTCAGAAAGCAGCCCAAATGGGTTCCACAAGAAGTAGTACCAACAACAACAATAATCACCCTATTTTCAGTGGCACCTTGGGAGTAATTTCATCATCTCCTAATAATTCCCACATAACCACAAATCTCAATGACAACAACAATGGAAATAATCCCCAGAATTTTAGTTCAACTGGCAGTGTTGAACCAGTTTTAGCAGAGAACAACTTTAATCTTGACCAGTTTTTGATGCAGGCCAGTACAAAGCAAAGTGAGCAGCAAGTGCAATTGAAGCTATACCCTGGTGGTGGTTCTTCATCGGAACATAGTTTAACGAGAGATTTTCTCGGCATGGGCGGCGGCGGAGGAGGTGGGCCCCCTCCTCCGTTTCTACCACAGGAGCTTGCAAAGTTTGCGGCCATTGGGTCACCCATCGGTTTGACCCAATTTACTACTGCCAACCATTGA 1479 0.4517 MHKMISVSDPFSLSTPIGGFPPPPPQQQQSSNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKACVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTTVPPTNLNIKNEAITSSQQTHNLGIDNNADIISQFGFNNGMGMGSEQQRASLSMWLNQGNNSSNSNNGFDVGALYGSSGLGEHMVTQMTTNQANNSAFGGSCNFGIATSNSTTNVGLLLPSGKRSEAMSKAASPMSATALLQKAAQMGSTRSSTNNNNNHPIFSGTLGVISSSPNNSHITTNLNDNNNGNNPQNFSSTGSVEPVLAENNFNLDQFLMQASTKQSEQQVQLKLYPGGGSSSEHSLTRDFLGMGGGGGGGPPPPFLPQELAKFAAIGSPIGLTQFTTANH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2258 492 Gene3D Classic Zinc Finger 47 120 - -
Mibi06g2258 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 463 IPR031140 -
Mibi06g2258 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Mibi06g2258 492 Gene3D Classic Zinc Finger 121 202 - -
Mibi06g2258 492 MobiDBLite consensus disorder prediction 1 53 - -
Mibi06g2258 492 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Mibi06g2258 492 FunFam protein indeterminate-domain 12-like 48 116 - -
Mibi06g2258 492 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Mibi06g2258 492 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Mibi06g2258 492 SMART c2h2final6 110 140 IPR013087 -
Mibi06g2258 492 SMART c2h2final6 69 91 IPR013087 -
Mibi06g2258 492 SMART c2h2final6 145 165 IPR013087 -
Mibi06g2258 492 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Mibi06g2258 492 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2258 Mibi-ChrMibi06 42981300 42983115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2258 9 479 IDZ Gene Family AT5G03150 47.732 1.37e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi06g2258 zf-C2H2_jaz 7.2e-05 CL0361