Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi06g2251 | ATGGGCAATACGGGAAGTAGTGGCGGCGGCGGCAACAACAACCGCCGCAGTAGGCACGGCGGAAGTGGCAGAAGGACTCATCCGCCTCCGCCTACGCCTACGCCGGTGACCCCACAGCCGGAAATCACCGCCAATCGATTTGTTCATCACTCAAATACTCCGCCGTATTATCAGTATCCAGGTTTCTATCCCCCACCGCCTACCACTATGCCTCTTCCTCTGCCTCCTCCTTTCGATCAACATCATCATCATCATCATCATCATCCTCCTCGTGTGGACCCGGTCTGGATGGGCGGACGTTACCCTTGTGCCCCTGTCGTGCTTCCTCCTCCGCCATATGTGGAGCATCAGAAGGCGGTTACCATAAAGAATGATGTCAATATCAAGAAGGAGACTCTCAGGATTGACCCTGATGACGACAATCCTGGGCGGTTCCTTGTGGCTTTCACATTTGACGCCACTGTGGCCGGCAGCATCACCGTACTTTTCTTTGCAAAAGAAGGTGATGGTTGCATTCTTACACCGACAAAAGAAAACCTTCTGGCACCTGTAACTGTGCACTTCGAGCAAGGTCTCGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATCGACTTTTCAATGTTTGAAGAATCAGAATTATTAAGAAGTGACATGGATGTCTACCCTCTAGCGGTGAAGGCAGATGCACCCTCTGGTAATCAAGAAGGATCAGATGAAACTCTTAGACCTGGTGGCACAAACTCGCAAATTACTCAAGCAATCTTTGAGAAAGAGAAAGGAGAGTTCCGGGTGAGGGTAATAAAGCAGATCTTGTGGGTGAATGAATTGAGATATGAGTTGCAGGAGATATATGGCATTGGGAACTCAGTGGAGAATGACTTGGATGGAAATGACCCTGGAAAAGAGTGTGTCATCTGCTTATCAGAGCCTCGGGATACAACAGTTCTTCCCTGTCGACACATGTGCATGTGTAGCGGATGTGCGAAGGTTCTGAGGTTCCAGACAAACAGGTGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAAGTCAGCAACGGGCCTGAAGATGAAGATGATACAGCAACACAAGTGTGTCGAGATCCCTGTACAGTATAG | 1128 | 0.4956 | MGNTGSSGGGGNNNRRSRHGGSGRRTHPPPPTPTPVTPQPEITANRFVHHSNTPPYYQYPGFYPPPPTTMPLPLPPPFDQHHHHHHHHPPRVDPVWMGGRYPCAPVVLPPPPYVEHQKAVTIKNDVNIKKETLRIDPDDDNPGRFLVAFTFDATVAGSITVLFFAKEGDGCILTPTKENLLAPVTVHFEQGLGQKFRQPAGTGIDFSMFEESELLRSDMDVYPLAVKADAPSGNQEGSDETLRPGGTNSQITQAIFEKEKGEFRVRVIKQILWVNELRYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVSNGPEDEDDTATQVCRDPCTV | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi06g2251 | 375 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 303 | 343 | IPR045195 | - | |
| Mibi06g2251 | 375 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Mibi06g2251 | 375 | MobiDBLite | consensus disorder prediction | 229 | 248 | - | - | |
| Mibi06g2251 | 375 | Pfam | Zinc finger, C3HC4 type (RING finger) | 302 | 348 | - | - | |
| Mibi06g2251 | 375 | SUPERFAMILY | RING/U-box | 303 | 349 | - | - | |
| Mibi06g2251 | 375 | ProSiteProfiles | Zinc finger RING-type profile. | 304 | 343 | IPR001841 | - | |
| Mibi06g2251 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 353 | IPR013083 | - | |
| Mibi06g2251 | 375 | MobiDBLite | consensus disorder prediction | 68 | 88 | - | - | |
| Mibi06g2251 | 375 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 288 | 353 | - | - | |
| Mibi06g2251 | 375 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Mibi06g2251 | 375 | MobiDBLite | consensus disorder prediction | 234 | 248 | - | - | |
| Mibi06g2251 | 375 | SMART | ring_2 | 304 | 342 | IPR001841 | - | |
| Mibi06g2251 | 375 | PANTHER | MAHOGUNIN | 1 | 356 | IPR045194 | GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi06g2251 | Mibi-ChrMibi06 | 42948136 | 42950560 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi06g2251 | 94 | 323 | C3H Transcription Factor Family | AT3G09770 | 65.546 | 1.73e-103 | 307 |