LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g2250	ATGAAGAATCTCTGTTCTTTGTCTACTTGTTTCTCATCTTCGGTTCAAGAACAAACCACCAAGCAAGGCAGAGAGAATGAAGGAACATTTCGAGTATTCACACAGAGCGAATTAAAATCTGCGACCAGGAATTTCGACTCCTCGAACAAAATTGGAGAAGGCGGTTTTGGCACTGTGTACAAGGGGCGGCTTGTGGATGGCACATTTGTGGCGGTCAAAGTTCTTTCGATTGACTTAGATTCACTGCGAGGAGAGAAGGAATTTGTAGCAGAACTGGGCACCCTGGGTGATATCAAGCACCCGAATCTAGTCACTCTCCGAGGTTGTTGTGTGGATGGAGCTCGCAGATACTTAGTGTACGAGTACATGGAAAACAACAGCCTTCACCACTACTTCTTAGGTTCACAGGAGGGGAGGATGAGATTTAGCTGGGAATCAAGGAGGGCAGTGGCCATAGGAGTGGCACGAGGGCTTGCGTATCTTCATGAGGAAATTAAGCCATATATTGTGCACAGGGACATTAAAGCCAGAAATATACTTCTTGATCGACATTTGAGGCCTAAAGTTTCTGACTTTGGTCTGGCAAAGTTATTGAGAGACGACAAGTCTTACGTTAGTACTCAAGTCGCTGGGACATTGGGTTATCTTGCTCCGGAATATGCCAGTTCTGGGAAAGTGACGAGAAAATCAGATGTTTACAGCTACGGAATATTACTCCTCGAAATTGTAAGCGGCCTACCAGTTGTTGATCCTTACCAAGACACGCAACGTTTCCTGGTTGAGAAGGCGTGGGAGGCGTATGAAGCTGATGATTTAACGAAAATGGTGGATGCAGAGCTGAAGGGAGAAAGCGTACCAGAGGAAGAAGAAAGCTTCAGATTCTTGAAGGTGGGGTTACTTTGCGTGCAAGAAACAGCGAAACTGAGGCCGAAAATGACAGAAGTAATTGAAATGTTGACCAAGAGTGAAATGTTAAATGTAAGTATTTCAAAGCCAGGGCTTGTTCCTGATCTGAGGGCTATCAGAATTAGAAACGCACCCCAATCTGATGTATCCACTTCCAGTGCAGCAGCCTATGCATCTTCCATTTGGAGTTCCGCCAGTCTTGCCCGTTAA	1116	0.4552	MKNLCSLSTCFSSSVQEQTTKQGRENEGTFRVFTQSELKSATRNFDSSNKIGEGGFGTVYKGRLVDGTFVAVKVLSIDLDSLRGEKEFVAELGTLGDIKHPNLVTLRGCCVDGARRYLVYEYMENNSLHHYFLGSQEGRMRFSWESRRAVAIGVARGLAYLHEEIKPYIVHRDIKARNILLDRHLRPKVSDFGLAKLLRDDKSYVSTQVAGTLGYLAPEYASSGKVTRKSDVYSYGILLLEIVSGLPVVDPYQDTQRFLVEKAWEAYEADDLTKMVDAELKGESVPEEEESFRFLKVGLLCVQETAKLRPKMTEVIEMLTKSEMLNVSISKPGLVPDLRAIRIRNAPQSDVSTSSAAAYASSIWSSASLAR	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g2250	371	SUPERFAMILY	Protein kinase-like (PK-like)	27	319	IPR011009	-
	Mibi06g2250	371	ProSiteProfiles	Protein kinase domain profile.	45	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2250	371	SMART	serkin_6	45	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2250	371	FunFam	Cysteine-rich receptor-like protein kinase 2	123	327	-	-
	Mibi06g2250	371	Pfam	Protein kinase domain	47	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2250	371	CDD	STKc_IRAK	51	321	-	-
	Mibi06g2250	371	Gene3D	Phosphorylase Kinase; domain 1	6	122	-	-
	Mibi06g2250	371	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	29	354	-	-
	Mibi06g2250	371	ProSitePatterns	Protein kinases ATP-binding region signature.	51	73	IPR017441	GO:0005524
	Mibi06g2250	371	Gene3D	Transferase(Phosphotransferase) domain 1	123	331	-	-
	Mibi06g2250	371	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Mibi06g2250	371	FunFam	Serine/threonine-protein kinase receptor	14	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g2250	Mibi-ChrMibi06	42922388	42924013	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g2250	16	327	Receptor kinase-like Gene Family	AT1G53420	46.965	4.14e-92	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mibi06g2250		Pkinase	5.2e-49	CL0016