Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2239 ATGGATATGTTTGGTGCAATGAAAGATGAGGGTGGGAAGAGGAAGAGGGAAGAAAGTAAAGTTTTGTCGGATTGCACATTTAGTAATCCCAGACGCGAGGAGGTTTATATATCAAAGATTTCTCTGCGAAACCCTTTTATCTTCGCATCGCAAACCTTATCTCTTTGCTTTGTCGCCGAAACCATGTCTTCCTCAGCCGCTTCCTTAGCCCTTCCCACATTCACCTCAAAGTTTCGGTCTTTATGCTTTGCCAGTCAAGCTTTGTTGTCTTCCCATTCTGATTCTTCCTCCTCTCTTCGATTGAAATCGAAACCCCTTTCTTTGTCTGCCTCTTTTCTTCGATTTTCCACACCTTCTTCTTCTTCCTCTCGTTTTGTCCCCAATGTTGCTCTTTCTTCTGAGTTTGAACAAGACGAGCTTGTTGCTGATGAAGACGAGCGTAGCTACTCCCCTGACCTCAAACTCTTCGTGGGTAATCTTCCCTTTAGCGTTGACAGTGCTCAACTTGCTGAGTTGTTCGAGAGCGCGGGAACTGTTGAGATGGTTGAGGTGATTTATGACAAAATGACCGGAAGAAGCAGGGGATTTGGCTTTGTGACCATGTCCACCTCTGAGGAAGTTGAAGCAGCCGCTCAACAATTCAATGGCTATGAACTTGATGGGCGGGCATTAAGAGTCAATTTTGGACCCCCACCTCCTAGGAGGGAGAATGCCCCTTTCAGGGGTTCCAGAGGTGGTTCTGGTTCAGATTCCGGATACCGTGTTCATGTAGGTAACCTTGCATGGGGTGTTGATAACTTGGCGCTTGAGAATCTGTTTGCTGAGCAGGGAAAGGTGTTGGAAGCGAAGGTAATTTATGACAGAGAGAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACGGCAGTGCTGATGAGGTCAACGGTGCCATCGAGTCCTTAGATGGTGTGGACTTAAATGGCAGATCTATCCGAGTTTCATTAGCAGATGCTAAGCCAAGGCGATCATTTTGA 1014 0.4645 MDMFGAMKDEGGKRKREESKVLSDCTFSNPRREEVYISKISLRNPFIFASQTLSLCFVAETMSSSAASLALPTFTSKFRSLCFASQALLSSHSDSSSSLRLKSKPLSLSASFLRFSTPSSSSSRFVPNVALSSEFEQDELVADEDERSYSPDLKLFVGNLPFSVDSAQLAELFESAGTVEMVEVIYDKMTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPPRRENAPFRGSRGGSGSDSGYRVHVGNLAWGVDNLALENLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGSADEVNGAIESLDGVDLNGRSIRVSLADAKPRRSF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2239 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 331 IPR000504 GO:0003723
Mibi06g2239 337 MobiDBLite consensus disorder prediction 229 249 - -
Mibi06g2239 337 PANTHER OS02G0815200 PROTEIN 70 335 - -
Mibi06g2239 337 CDD RRM_HP0827_like 154 231 - -
Mibi06g2239 337 SUPERFAMILY RNA-binding domain, RBD 251 335 IPR035979 GO:0003676
Mibi06g2239 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Mibi06g2239 337 SMART rrm1_1 154 227 IPR000504 GO:0003723
Mibi06g2239 337 SMART rrm1_1 254 327 IPR000504 GO:0003723
Mibi06g2239 337 MobiDBLite consensus disorder prediction 1 20 - -
Mibi06g2239 337 FunFam Ribonucleoprotein A, chloroplastic 131 253 - -
Mibi06g2239 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Mibi06g2239 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 225 IPR000504 GO:0003723
Mibi06g2239 337 SUPERFAMILY RNA-binding domain, RBD 148 252 IPR035979 GO:0003676
Mibi06g2239 337 Gene3D - 251 337 IPR012677 -
Mibi06g2239 337 Gene3D - 132 250 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2239 Mibi-ChrMibi06 42838624 42842572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2239 255 336 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 1.74e-07 50.8