Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2191 ATGGAGGGTATCAATATCATTAAGGAGGAGGAATTTATGGTGGCGTGCAGGGAAGAGGCACAAATAATGAAGGGAAGGCGTACCAAGCGTCAAAGAGCTCACTCCCCACTAAGGCTGGCCATAGCATTGCCCTCTACATCAGCCACCACCATGAACAACCTCTGTTCCTCATCATCTGAACTCAGGGACATCACGTCCACAACAGAGGAAGAGGCAGACATGGCCAACTGTTTGATTCTTTTGGCCAAAGGCAAATTCGTCTCTCACCCCTTGAAGGAAGGGACATACCTTTACCAGTGTAAGACTTGTGAGAGAGGCTTCCCTTCTTTTCGAGCGCTTGGTGGACACAGAGCAAGACATAAGAAGATGAAGCCTAACCATTGCGAAGATTACTGTTCCAGTACTGCTCTGTCCTTGCAATTATCATCAGATAATAGGCTTTCTTTGTATAGTGCTCATAATAAGTCTTCGTCGTCCAAAGTTCATGAGTGTTCCATTTGTGGGGCTGAGTTCTCTTCTGGTCAAGCCTTGGGTGGTCACATGAGAAGGCATAGAACCATAATTAGAGGTAGCCCCCAATCTCATGAAGACTTAAAGAAACCCACCAGAAATGCGTTCAACTTGGACTTGAATCTTCCTGCACCTGATGATGAAGATCCTGATTCCAAGTTCCCCTTTCACTCCAATGACTCTGTCCTTGTCCTCTCGGCCTCTCCTTTGGTGGATTGTCATTACTGA 738 0.4648 MEGINIIKEEEFMVACREEAQIMKGRRTKRQRAHSPLRLAIALPSTSATTMNNLCSSSSELRDITSTTEEEADMANCLILLAKGKFVSHPLKEGTYLYQCKTCERGFPSFRALGGHRARHKKMKPNHCEDYCSSTALSLQLSSDNRLSLYSAHNKSSSSKVHECSICGAEFSSGQALGGHMRRHRTIIRGSPQSHEDLKKPTRNAFNLDLNLPAPDDEDPDSKFPFHSNDSVLVLSASPLVDCHY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2191 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Mibi06g2191 245 SMART c2h2final6 162 184 IPR013087 -
Mibi06g2191 245 SMART c2h2final6 98 120 IPR013087 -
Mibi06g2191 245 Pfam C2H2-type zinc finger 161 186 - -
Mibi06g2191 245 Pfam C2H2-type zinc finger 98 122 - -
Mibi06g2191 245 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Mibi06g2191 245 SUPERFAMILY beta-beta-alpha zinc fingers 159 185 IPR036236 -
Mibi06g2191 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Mibi06g2191 245 PANTHER ZINC FINGER PROTEIN ZAT5 58 220 - -
Mibi06g2191 245 Gene3D Classic Zinc Finger 138 208 - -
Mibi06g2191 245 SUPERFAMILY beta-beta-alpha zinc fingers 95 128 IPR036236 -
Mibi06g2191 245 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2191 Mibi-ChrMibi06 42400404 42401141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2191 10 245 C2H2 Transcription Factor Family AT5G04390 33.425 4.26e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi06g2191 zf-C2H2_6 5.5e-13 CL0361