Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2175 ATGGGATTTAGCAGAATCCTCTTCTGGCTCCTTGCCTTTTTCACCTTTTCCTTTTGCATCATGATTATTTGTTACTACACGCCACCTTCCCCCACCACCATCTCCTCCATTGATCCTCACACTAAGCAATATGCAATCTTAAGGAGGCTTATTATAAAGCTAAGTGGCGTTGAAGACTTGGTGGCTCTAATGACAAGACTTGCGGTGGGACTTCAAAGCCTAATGAAGCACAATGAAACATGTGACCAGACCATATGGAATTCTCATCTTATATCGGACTACAATGTGACTCTTGTTTTAACGGTTAGTTCAAAGGGCTGCGGAAATTTTAGCAGCATACAAAAAGCAGTGGACGATGTTCCTGAGTCAAAACCTGATAAAACCCTCATTATTGTTGATTCCGGCATATACAGAGAGAAGGTTGTGGTGGAGGCCAACAAAACAAATCTGATATTGCAAGGTCAAGGATATTTGAATACAATCATAGAATGGAATGACACTGCCAATTCTACGGGAGGAACCCCTTATAGTTACTCAGTTGGAGTCTTTGCTTCTAAGTTTCTTGCCTACAACATCAGTTTTAAAAATACGGCTCCAGCAGCATTACCGGGTGTTGAAGGAGGACAAGCAGTAGCTCTAAGAGTGAGAGGCGACCAATCTGCGTTCTATGGATGTGGAATATATGGTGCTCAAGACACTCTCCTTGATGATAGTGGAAGACACTATTTCAAAGAATGTTTCATCCAAGGATCAATCGACTTCATATTTGGGAATGCCAGGTCTCTTTATCAGGATTGTACTATAAATTCTATAGCAATAGACAAAGGGACTGAGATTACTGGAGCCGTCACAGCTCAAGCGAGAGAGTCGGAAAATGAAGAAACTGGTTTTTCGTTCGTGAATTGTAAGATTGATGGGAGTGGGAAAGTGTATCTTGGGAGAGCATGGGGACCTTATGCCGTTGCGGTCTTTTCAACAACATTTATGTCAGATGTTGTTGCTCCTACAGGATGGGACGATTGGAAAAATACTACTAGAGACAACACTGTCTTTTTTGGGGAATATAATTGTTTTGGAGATGGAGCCAACTCTTCTTCTAGAGTCCCATATGGAAAGCAACTTAAAGACTATGAGGCAGCCCAATACATGGACGTTTCATACATTGATGGAAGCGACTGGCTTCTTAATCATCGAAGATAG 1200 0.4183 MGFSRILFWLLAFFTFSFCIMIICYYTPPSPTTISSIDPHTKQYAILRRLIIKLSGVEDLVALMTRLAVGLQSLMKHNETCDQTIWNSHLISDYNVTLVLTVSSKGCGNFSSIQKAVDDVPESKPDKTLIIVDSGIYREKVVVEANKTNLILQGQGYLNTIIEWNDTANSTGGTPYSYSVGVFASKFLAYNISFKNTAPAALPGVEGGQAVALRVRGDQSAFYGCGIYGAQDTLLDDSGRHYFKECFIQGSIDFIFGNARSLYQDCTINSIAIDKGTEITGAVTAQARESENEETGFSFVNCKIDGSGKVYLGRAWGPYAVAVFSTTFMSDVVAPTGWDDWKNTTRDNTVFFGEYNCFGDGANSSSRVPYGKQLKDYEAAQYMDVSYIDGSDWLLNHRR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2175 399 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Mibi06g2175 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 394 - -
Mibi06g2175 399 FunFam Pectinesterase 94 399 - -
Mibi06g2175 399 Pfam Pectinesterase 101 390 IPR000070 GO:0030599|GO:0042545
Mibi06g2175 399 Gene3D - 94 398 IPR012334 -
Mibi06g2175 399 SUPERFAMILY Pectin lyase-like 98 394 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2175 Mibi-ChrMibi06 42239914 42241566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2175 93 394 Carbohydrate Esterase AT1G05310 54.098 7.96e-114 336