Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2167 ATGATAATACTTTACCAAATATTTTACTCAACAAAGAAAGAACACGAAAAGGTTGCTACTACCGGCATAGTAGTTTACAAATTCAACACTTCATCCATCGATCGATCGATCCCACTCAGTCCCCTTCTCTCGCATTCTTCCATGGCGGAATCAGCTTCTGGCGATTCATCCAACACCACTCCGCCACCGGAGACCAAACCGGAGCCCACCGAGACCAAACCGGAAGCTTCGGAGAGCAAACCGGAGGTCACTGAGAGCAAACCGCAGCATAAAAGTTGGGCCGATGAAGCTGAGGAAGAAGTTATAGAGGAAACGAATGCTGCATCATCAGAGCCCTCGCTTAGCGTTGAGGGATTAGCCATCGACGAGAATAAGAAGGCTACTAAATTCTTGGACGAACCGGAGGATTCTAACATTCAAGCGGTTACTTCTGGTGATACTCCATATACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCAGAGCTGCTAAAAGGATTGTATGTTGAGATGAAGTTTCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATCTTGAGTCCTCCTTTTAAGGATCTGATTGCACAGGCACATAATGGTTCAGGCAAGACAACTTGTTTTGTGCTTGGGATGCTTAGTCGCGTTGACCCCAACATGAAGGCTCCTCAAGCTCTTTGCATTTGTCCAACTAGAGAATTAGCTATTCAGAATACTGAAGTTCTTCAAAAGATGGGGAGATACACTGGGATCGTTTCAGAATGTGCCATACCAACAGACAGCAGAGATTTCATTCCAATAGCAAAACGGGCGCCTATTATGGCACAAGTAGTAATTGGGACCCCTGGAACAATTAAGAAGTGGATGGCACATAAGAAATTGGGTGCGGCCAGATTAAAAATTCTTGTCTTCGATGAGGCCGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATGCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAGTTGTCAAGAATTTTGTTTCAAGAATAGTTAAGAGGGATCACAATCAACTTTTTGTAAAGAAAGAAGAGCTATCTTTAGAGTCAGTTAAGCAATACAAGGTGAATTGTGTTGATGAACTCTCTAAGATTGAAGTGATCAAAGATTACATCTTTGAAATTGGAGAGAATGTGGGCCAAACGATCATATTTGTGCGCACAAGAAATAGTGCAAGCATGTTGCACAGAGCACTTGCTGATATGGGCTACGAGGTCACTTCTATACAAGGTGCTCTTCAGCATGAGGAAAGAGATAAGATTGTCAAGGAGTTCAGAGATGGTCTGACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAACAACAGGTTAATTTGGTTATTAATTATGATCTTCCGGTGAAACATACTGCGGGGTATAGTCGTGACCCGGAGCCCGATTATGAGGTGTATTTGCACAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAATCTCATATGTGATGAAAGGGACGCAAATGTCATGGCAAAGATCGAGAAGCACTTTGGCACCCATATAATTGAGGTCCGAGAAAATAGCGTTGAAGACTATAAAGGAGCTCTTAGGGAGGCTGGTTTATTGCAATGA 1689 0.4298 MIILYQIFYSTKKEHEKVATTGIVVYKFNTSSIDRSIPLSPLLSHSSMAESASGDSSNTTPPPETKPEPTETKPEASESKPEVTESKPQHKSWADEAEEEVIEETNAASSEPSLSVEGLAIDENKKATKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPNMKAPQALCICPTRELAIQNTEVLQKMGRYTGIVSECAIPTDSRDFIPIAKRAPIMAQVVIGTPGTIKKWMAHKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKDIERVNANCQVLLFSATFNEVVKNFVSRIVKRDHNQLFVKKEELSLESVKQYKVNCVDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSASMLHRALADMGYEVTSIQGALQHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAGYSRDPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDANVMAKIEKHFGTHIIEVRENSVEDYKGALREAGLLQ 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2167 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 363 IPR014001 -
Mibi06g2167 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 526 IPR027417 -
Mibi06g2167 562 SMART ultradead3 173 379 IPR014001 -
Mibi06g2167 562 SMART helicmild6 418 511 IPR001650 -
Mibi06g2167 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 552 IPR001650 -
Mibi06g2167 562 CDD DEADc_DDX19_DDX25 160 364 - -
Mibi06g2167 562 Gene3D - 132 369 IPR027417 -
Mibi06g2167 562 MobiDBLite consensus disorder prediction 45 118 - -
Mibi06g2167 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 103 532 - -
Mibi06g2167 562 CDD SF2_C_DEAD 376 520 - -
Mibi06g2167 562 Pfam Helicase conserved C-terminal domain 389 511 IPR001650 -
Mibi06g2167 562 Pfam DEAD/DEAH box helicase 179 351 IPR011545 GO:0003676|GO:0005524
Mibi06g2167 562 MobiDBLite consensus disorder prediction 45 61 - -
Mibi06g2167 562 MobiDBLite consensus disorder prediction 68 97 - -
Mibi06g2167 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 182 IPR014014 GO:0003724
Mibi06g2167 562 Gene3D - 370 558 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2167 Mibi-ChrMibi06 42143318 42147978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2167 146 546 Eukaryotic Initiation Factors Gene Family AT1G72730 36.320 1.45e-70 231