Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2165 ATGGAAGTTCCTCCGACGGCATCTGCTTCGCTTTATGTCGGCGACCTTCACCCTGACGTCAGCGATGGACAGCTGTTCGAAGTGTTCTCCGAGTTCAAGAGCATCACTTCTGTTCGCATCTGTAGGGATTCCTCCACCGGCAGGTCACTCGGCTATGGCTATGTCAACTTCACCTCTCTCCAAGATGCTACTCGTGCTCTGGAGGTGAAGAATCACTCCAAACTGAATGGAAAAATGATAAGAGTCATGTGGTCACATCGTGACCCTGAAGCAAGAAAAAGCGGCAAAGCGAACGTATTTGTTAAGAACTTAGCTGAATCTATAGATAACGCGGAATTACACGAAATGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGTCATGTCCGAAGATGGGAAGAGCAAAGGGCATGGCTTCGTTCAGTTTGAGTCAGAGGACTCTGCAAATGCTGCCATTGAAAAATTGAATGGCTCTACTGTCAGAGATAAACAAATATATGTTGGTAAGTTTGTCAAAAAAAGTGAACGCGTCATGACTGATCCTGATTCCGACTTCACAAATTTGTTCATGAAAAATTTGGACCCAGAGATTACAGAAGAGCTTCTGCAGGAAAAGTTTGCTCTTTTTGGCAACATTGTTAATTTGGCTATTGCTAAGGACTACAATGGAGTATCAAAGGGTTTCGGCTTTGTGAACTATACTAATCCGGGTGATGCTAAACGGGCAATGGAAGCCATGCATGGATCTCGACTAGGTTCGAAGATTATATATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTAAAAAAATCTTGCACTGTCAGTTTGTGGAGAAACGTAAGGAACAGATATTGAAATTTAAGGGATCAAACATTTATGTGAAAAACATTGACGAGGATGTCAATGATGAAGGACTAAGAAATCATTTTAGTACATGCGGCACGATAACATCTGCCAAAGTTATGCGGGACGACAAAGGAAGAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCTACTCCCGAGGAGGCTTATAAAGCTGTGAACAATTTCCACGGATGCATATTTCATGGTAAACAGCTATATGTTGCTTTCGCTCAGAGGAAGGAAGATAGGCTAGCAAGATTAAAGGTTCGGTATGCCCAGGGAACGGAAGGACTAGCTGGACCTTCGACCGCTTTTATACATGGTGGGTATACTCCTTACTACTACGCTACTGGTGTCGTTCCACATCTGCCGCATCCAACCGGGCTAGTATATCAACCGCTGGGAATGAAGCCAGGATGGAGGCTTAATGGCTTTGCACCTCCAACTGGACCAGTTCAACAGGCTCTAGTTTCTGTTCCTGCTACTTCTATGAGGCCGCACAGACAACACAGGAGCAGGATGAATGGGCAGGCAAGTTTCCGGGGGAATCCTTCCTTTGGTACGTTCATGCCACAAGCACGACAGCCTTCTCAATCAATGGCTTCGTCAAAAGAATCAACTACCCAGCAGAGGACTGGGCTGACTAAATATGTGGCCCAATGTCAGATGGAAAAAGGATCTGGAGTCCCACCTTATTGTTTTAATCCTACTGTTGGGAGTCAAGGATCGAAAATGCTCCATGGCATGCTTGCTGCTGCCACTCCTGAGCAGCAAAAGCAATTCCTTGGCGACCATATTTACCCAATAATCCAGAAACTCAAGCCTGGCTTGGCAGCTAAGATTACTGGGATGCTCTTGGAGATGGAAATTGGAGAATTGCTGCTTCTCCTGGAATCTCCAAGGTCTCTTTTTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTCATAACTCCAACACTGAAGTGTCAGGCCAGGATACACTTCGTCCAAGTTACTTTTCGGCTGAGGTTGCTGTGAACTGA 1887 0.4531 MEVPPTASASLYVGDLHPDVSDGQLFEVFSEFKSITSVRICRDSSTGRSLGYGYVNFTSLQDATRALEVKNHSKLNGKMIRVMWSHRDPEARKSGKANVFVKNLAESIDNAELHEMFQNFGKILSSKVVMSEDGKSKGHGFVQFESEDSANAAIEKLNGSTVRDKQIYVGKFVKKSERVMTDPDSDFTNLFMKNLDPEITEELLQEKFALFGNIVNLAIAKDYNGVSKGFGFVNYTNPGDAKRAMEAMHGSRLGSKIIYVARAQKKAERKKILHCQFVEKRKEQILKFKGSNIYVKNIDEDVNDEGLRNHFSTCGTITSAKVMRDDKGRSKGFGFVCFSTPEEAYKAVNNFHGCIFHGKQLYVAFAQRKEDRLARLKVRYAQGTEGLAGPSTAFIHGGYTPYYYATGVVPHLPHPTGLVYQPLGMKPGWRLNGFAPPTGPVQQALVSVPATSMRPHRQHRSRMNGQASFRGNPSFGTFMPQARQPSQSMASSKESTTQQRTGLTKYVAQCQMEKGSGVPPYCFNPTVGSQGSKMLHGMLAAATPEQQKQFLGDHIYPIIQKLKPGLAAKITGMLLEMEIGELLLLLESPRSLFAKVEEAVQVLHNSNTEVSGQDTLRPSYFSAEVAVN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2165 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Mibi06g2165 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 258 IPR000504 GO:0003723
Mibi06g2165 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 361 IPR000504 GO:0003723
Mibi06g2165 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Mibi06g2165 628 Gene3D - 2 93 IPR012677 -
Mibi06g2165 628 MobiDBLite consensus disorder prediction 479 500 - -
Mibi06g2165 628 Coils Coil 622 628 - -
Mibi06g2165 628 FunFam Polyadenylate-binding protein 179 273 - -
Mibi06g2165 628 CDD RRM1_I_PABPs 10 89 - -
Mibi06g2165 628 Gene3D - 529 619 - -
Mibi06g2165 628 SUPERFAMILY RNA-binding domain, RBD 289 384 IPR035979 GO:0003676
Mibi06g2165 628 PANTHER OS02G0815200 PROTEIN 183 369 - -
Mibi06g2165 628 Gene3D - 94 177 IPR012677 -
Mibi06g2165 628 SMART poly_2 543 606 IPR002004 GO:0003723
Mibi06g2165 628 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 9 603 IPR006515 GO:0003723
Mibi06g2165 628 Gene3D - 178 274 IPR012677 -
Mibi06g2165 628 Gene3D - 275 383 IPR012677 -
Mibi06g2165 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Mibi06g2165 628 SUPERFAMILY PABC (PABP) domain 535 613 IPR036053 GO:0003723
Mibi06g2165 628 SMART rrm1_1 98 170 IPR000504 GO:0003723
Mibi06g2165 628 SMART rrm1_1 10 83 IPR000504 GO:0003723
Mibi06g2165 628 SMART rrm1_1 292 364 IPR000504 GO:0003723
Mibi06g2165 628 SMART rrm1_1 189 261 IPR000504 GO:0003723
Mibi06g2165 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
Mibi06g2165 628 SUPERFAMILY RNA-binding domain, RBD 8 177 IPR035979 GO:0003676
Mibi06g2165 628 SUPERFAMILY RNA-binding domain, RBD 182 270 IPR035979 GO:0003676
Mibi06g2165 628 SMART rrm2_1 10 83 IPR003954 GO:0003676
Mibi06g2165 628 SMART rrm2_1 292 364 IPR003954 GO:0003676
Mibi06g2165 628 SMART rrm2_1 98 170 IPR003954 GO:0003676
Mibi06g2165 628 SMART rrm2_1 189 261 IPR003954 GO:0003676
Mibi06g2165 628 FunFam Polyadenylate-binding protein 274 382 - -
Mibi06g2165 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 265 IPR000504 GO:0003723
Mibi06g2165 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 531 608 IPR002004 GO:0003723
Mibi06g2165 628 FunFam Polyadenylate-binding protein 98 178 - -
Mibi06g2165 628 CDD RRM4_I_PABPs 290 368 - -
Mibi06g2165 628 Pfam Poly-adenylate binding protein, unique domain 538 603 IPR002004 GO:0003723
Mibi06g2165 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 368 IPR000504 GO:0003723
Mibi06g2165 628 CDD RRM2_I_PABPs 95 171 IPR045305 -
Mibi06g2165 628 FunFam Polyadenylate-binding protein 2 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2165 Mibi-ChrMibi06 42127168 42131766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2165 8 626 Eukaryotic Initiation Factors Gene Family AT2G36660 48.485 0.0 566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1319 02 13032358 13036316 Mibi06g2165 06 42127168 42131766 CCT
Mibi06g2165 06 42127168 42131766 Mibi06g2165 06 42127168 42131766 ECH