LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g2157	ATGGGAGACAAGCACGAAGAGAATCGGACTGAGAGCAGCGATTTCACTTCAGAGGACGAAGGCACCGAGGACTATCGACGGGGAGGTTACCACGCTGTGCGAGTCGGCGATACCTTCAAGAATGGTCGCTATGTTGTTCAGAGCAAGCTTGGTTGGGGGCACTTCTCCACCGTCTGGCTCGCCTGGGACATCCAACTTTCGAGATACGTGGCTCTGAAAGTTCAAAAGAGCGCTCAGCATTACACTGAGGCAGCCATGGATGAGATAACCATTTTACAACAGATTGCAGATGGAGACCCAGAAGATAAGAAGTGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGTCCCAACGGACAACATGTTTGCATGGTATTTGAATACCTTGGGGATAATCTTTTAACGCTTATCAAGTATACTGATTACCGAGGATTACCAATCAACATGGTTAAAGAGATATGCTTTTATGTTTTGGTTGGATTAGATTACTTACATAAGCAGCTTTCTATAATTCATACTGACTTGAAGCCTGAGAACATCCTCCTATTATCAATGATAGATCCATCCAAGGATCCTAGAAAGTCTGGTGCTCCCTTAATTCTTCCAAACGCTAAAGATAAAACAGCCCTTGAATCGGGAATTGGGGGGAAAGAAGTCAAAACATCAAATGGGGAATTAATGCGGATTCATAAGAAAAAGATTAAGAGGAAAGCTAAGCAGGCAGCTCAGGGATGTGTAGAGATGGAAGCTTCTGAGGAAATCGAGGGGAATCCTGTAACATTTGGTGCTGCAGAGTCATCTGCAAATGCAATACTAAATGCAGGTTCAGTAGGAGAACAACCTTCTAGTTCTGTAGGCGCCAGTAGGTTATCTGATGATGATGTGACTGGGGTAAACTGGTCAAAAAACCAGGGTAACAAAAGAGGAAGCCGGTCATTGAGGCAGAAGTTGCTGAAATCAGTTGGCCTTAAGTGCAAATTAGTTGACTTTGGCAATGCTTGTTGGACGTATAAGCAGTTTACAAATGATATTCAGACAAGACAATATCGATGTCCAGAAGTGATCCTTGGATCAAAGTATTCTGCATCAGCCGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGTGATGTGCTATTTGATCCTCATAGTGGTGACAATTTTGATAGAGATGAGGATCACTTAGCACTAATGATGGAACTTCTGGGCATGATGCCTCGCAAGATTGCGCTTGGGGGCCGCTACTCCCGTGATTTTTTCAATAGATATGGTGATCTGAGACACATACGTCGTTTGCGTTTTTGGCCCTTGAGCAAAGTTCTCGTGGAGAAATATGATATCAACGAGCGTGATGCCAGTGACATGGCTGACTTTTTGGTTCCTATTCTGGACTTTGTTCCTGAGAAACGACCAACAGCTGGTCAGTGCCTTCTGCATCCATGGATCAATGCCGGTCCCTGGACTTTGGAGCCATCTGTGCCATCTTCTAACCGCAATTCAGCTACGGATGGTGCTATCTCTGAGCAAAAGAAAAAGGATAAGGATGATAGAGAGGCCATGGAGGCAGGGATGGGGAATATTGCCATCAATTCAGATTCTAAACCTCACACGGATTTATCAGCTAAAGCCTGTCAAAGCAGTCAGAAGTAG	1662	0.444	MGDKHEENRTESSDFTSEDEGTEDYRRGGYHAVRVGDTFKNGRYVVQSKLGWGHFSTVWLAWDIQLSRYVALKVQKSAQHYTEAAMDEITILQQIADGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYTDYRGLPINMVKEICFYVLVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAPLILPNAKDKTALESGIGGKEVKTSNGELMRIHKKKIKRKAKQAAQGCVEMEASEEIEGNPVTFGAAESSANAILNAGSVGEQPSSSVGASRLSDDDVTGVNWSKNQGNKRGSRSLRQKLLKSVGLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSASADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLSKVLVEKYDINERDASDMADFLVPILDFVPEKRPTAGQCLLHPWINAGPWTLEPSVPSSNRNSATDGAISEQKKKDKDDREAMEAGMGNIAINSDSKPHTDLSAKACQSSQK	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g2157	553	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Mibi06g2157	553	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Mibi06g2157	553	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	9	516	-	-
	Mibi06g2157	553	Pfam	Protein kinase domain	44	183	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2157	553	Pfam	Protein kinase domain	325	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2157	553	ProSiteProfiles	Protein kinase domain profile.	44	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2157	553	FunFam	Serine/threonine-protein kinase SRPK-like protein	316	486	-	-
	Mibi06g2157	553	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Mibi06g2157	553	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Mibi06g2157	553	SMART	serkin_6	44	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2157	553	MobiDBLite	consensus disorder prediction	534	553	-	-
	Mibi06g2157	553	MobiDBLite	consensus disorder prediction	509	525	-	-
	Mibi06g2157	553	MobiDBLite	consensus disorder prediction	1	24	-	-
	Mibi06g2157	553	Gene3D	Transferase(Phosphotransferase) domain 1	127	487	-	-
	Mibi06g2157	553	MobiDBLite	consensus disorder prediction	496	553	-	-
	Mibi06g2157	553	CDD	STKc_SRPK	33	486	-	-
	Mibi06g2157	553	SUPERFAMILY	Protein kinase-like (PK-like)	38	500	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g2157	Mibi-ChrMibi06	42037546	42041241	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g2157	1	538	EF-hand Containing Proteins	AT5G22840	66.174	0.0	727

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Mibi06g2157		Pkinase	4.3e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi06g2157	06	42037546	42041241	Mibi06g2157	06	42037546	42041241	ECH