Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2156 ATGGAATGGAATGGAAGCATCAGGCCACCCTTTGTTCCTAGACCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCACCCCATATCCAGGAATGGAAGTGAAACATGCAGCAGCAGCAGCAGCACAAGGGTTGGTTCCGGATATGGAAAAAATAAAGTATGGGAACCATATGGAGAAGAAGAAGCGACTGACAAGTGAGCAGCTTGAGTCTCTGGAGAGGAGCTTCCAGGAGGAGATAAAGTTGGATCCTGATAGGAAGATGAAGCTCTCAAGGGAGCTTGGTCTTCAGCCTCGCCAAATTGCTGTTTGGTTTCAGAATAGGCGTGCTAGGTGGAAGGCCAAGCAGCTAGAGAATTTGTACGATGCCCTCAAACAAGAATTTGATGCCATCTCTGAGGAAAAACAGAAGCTTCAAGAGGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAGGTTTCTGCCGGGTACACGGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGAGGGGCTCTAATAATAACAAGCACCATCATCATCATCAGCAGCAGCAGAACGTTGCAGAAGCCAATTGTTCGTACACTGTAGAGGATTATAGCACTGTTTCACTCCCCTACTGGTCTGCTCTTGTGCCTTATTATCCTTAA 681 0.4655 MEWNGSIRPPFVPRPESSLSFLYNYNCTPYPGMEVKHAAAAAAQGLVPDMEKIKYGNHMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQKLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGSNNNKHHHHHQQQQNVAEANCSYTVEDYSTVSLPYWSALVPYYP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2156 226 Coils Coil 108 156 - -
Mibi06g2156 226 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Mibi06g2156 226 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Mibi06g2156 226 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Mibi06g2156 226 SMART HOX_1 59 120 IPR001356 GO:0003677
Mibi06g2156 226 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Mibi06g2156 226 MobiDBLite consensus disorder prediction 161 182 - -
Mibi06g2156 226 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Mibi06g2156 226 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Mibi06g2156 226 Gene3D - 55 124 - -
Mibi06g2156 226 SUPERFAMILY Homeodomain-like 52 118 IPR009057 -
Mibi06g2156 226 FunFam Putative homeobox-leucine zipper protein ATHB-51 58 121 - -
Mibi06g2156 226 CDD homeodomain 61 117 IPR001356 GO:0003677
Mibi06g2156 226 MobiDBLite consensus disorder prediction 161 198 - -
Mibi06g2156 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 195 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2156 Mibi-ChrMibi06 42029257 42030456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2156 1 146 Homeobox Transcription Factor Family AT5G03790 56.173 4.88e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi06g2156 Homeodomain 3.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2156 06 42029257 42030456 Mibi02g1309 02 12946090 12946918 CCT
Mibi06g2156 06 42029257 42030456 Mibi06g2156 06 42029257 42030456 ECH