Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2144 ATGGACATGGACAATTCTCGTAGATCGTTTGACAGGATGGGAAAACTTGGTATGAAAAAACCCCGATTGCAAAACGAGCTCGAGTTCGACCCAAATCAAAGTATTCGACCATTTCCTCAGCGACAAGTGGCTTCTGGGGTTAATTTGTTGGCTTCGGCAAGGTTTAGAACAAGCGACAGAGATCAGGGAAGCAATGATTTAGGTCGCGGACCCCAGCAACTTCTGCACCAAGATCTTACAACTCAGTATAAGACTGCGCTTGCTGAGCTGACTTTTAATTCAAAACCAATAATCACGAACTTGACTATAATTGCTGAAGAGAATGTCCATGCGGCCAAGGCTATTGTTGCGACTATTTGCTCTAATATTCTTGAGGTGCCTAATGAGCAAAAACTGCCATCACTCTATCTGCTGGACAGCATAGTTAAGAATATTGGGCGGGAATATATCAAATACTTTTCTGCCAGACTACCTGAGGTATTTTGCAAGGCATACAGACTGGTTGATTCATCTGTCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAAGGGGTCTTTCCTCTTCAGACCCTTCAAATGATTGAGAAAGAACTGAGTTTTACTCCCGCAGCCAATGGCTTATCTTCTTCTTCCCCATCAACCATGCTCAAGAGTGATTCACAAACACAACGCCCACCTCATGGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAATCCAATAGGGCCATAGGTACAGCTAATGATATGATTGGAACTATCGCAAGCTCAACTCTGGACACAGATAAGCCGGATAGAGCTGTGGTCACTGCCCGACCTTGGGCAGATCCCAGACTTAAAATGCGCAACATTAAGCCTGCCAATAGAGATGCATTTAATGATTCTCTTCCTGAAAAGAGTAACGATGCATCATGTGGAGGCAATGGACAAAGTTTCACTCTTTCTAGTAAAGTGGGCTTGGGCATCGGAAGAACTGGTGGTAGGGTCACTGATTTTGAACATGACAAAATATGGTACAAATCAGGCAGTGGTATTGGAGAGGTTTCTGAGCAAAGAAATGGTTTAAGTCTCAAGCATGGTAGTTCATTTCATGAAGCAACAAAGTCATTAAATTTGGATGCACATCAGCTACCAAGACAAAGCTTAACTGAAATACATATTAGGAGTAGCTTGATATCAAGGAGCTGGAGAAATTCTGAGGAGGAGGAATTCATGTGGGACAATATGGACTCTGGGGTGACTGATAACACTGCATCCAGTGTCTCTAGTAACTTGGGTAAAGATCATTGGACTACTGATGATGAAGGCTTGGGTCCACCACGGTCATGGCAATTGCAGGGGCATCATTTACTTGATGAGTTGAATTGTAAGGTAGATCACACGGAAGGCTTTGCATCTACTGGTAGGTTACCATCAATTATGAAATCTTCTGCTATCATGACGGGTAATCGGCCTTTCCTGCCAAATTCAACCGCAGGAGTGGTGGGACAGCATAAATTTCACTCCGTTCAAGCTGACACCCCTTCAGGTGGACAGTCTCCTTCATTACAAGAAACAATGTGTGCGCCTCACCATGAGCGAAATTTGGTTGAGCAAGACCATCGGCAGACTCTTAAACCATCTCATCTTTCTGGAGATCTGCATGGCAAATATATTCAAGATCCTTTGGCTGCAGGTTCTTCTAATATTCAGGTTGGCAAGGTGCAAAAATCACAACATAGGGACTTGCGTGGTCCAGTACCTTCATTTACTTATTCTCAACCAACGCATTGTACTGGAGTTTTGCCAAAGCAGCAGCCTGTTCCTTCCCTTCCTGAAGTTTCTGATAAGACAGAGAACCTGGACCAGTCAAAAGTTTCTCTAGCCAGTGAAACTTTTGATCAGCCAGCATCAAGCGGTTTGTTAGCTGCAGTTATGAAGAGTGGGATTCTTAGTGGTTCGACTATTAATAATCTCCTTTCTTCAAATTTCCTGGATACAGGGATTCTACCATTACAACCAGGGAATCAGCCTACACCGCTAGGTGGGCCTGGGGGGAAGGCTGCATCTCCATCTTCATTTGGTAGTTCATTAGACAACTCATCTGATCTGACAAAAATATCTCAAGGAAAGGTTGGACAACCACCTAGGGCATCTGATCCACCTCCAGCTTCCTCTACTGTGTGTAGTACCTCAGCTTGGACCTCAAATTCCATCAATGCCTCAAGTCCAATTTCAAACCTTTTAAGTTCATTAGTTGCAAAGGGTTTGATATCTGCAAAGTCCGAGTCATCAATTAAGGCACCAAATGATATGCTGAGTCGTTTGGAAGATCAAAGCCATAGCATTGGCACTAGTAGCTCTTCACCAGTTGCTTCTGTTTCTGGTTCTCCAGCTGAACACGTACCATCGATTGGAGATGAGGTAGACCATGATGCAAACAGCTCTGTTTCCTTATCTCAATCAACCGCCTCAGAAACAAGAAACCCTGTTGGCGTTGAGTTTAAGCCTCATGTAATCCGACAATTCAATCCATCTGTGGTCAGTGAACTATGGGATGATCTTCTGCATCATTGCAGCATTTGTGGCCTTAGGCTTAGACTTAAAAAACAATTTAATGGACACTTGGCTTGGCATGCTATGAGGGGAAAGGAACAAAATGGTCTGATTCAGGCATCAAGAAGATGGTATGTGCAGTCAAGTGAGTGGATTACTGGCAAGGTTGAATATTCGACTGAATCTGAGTCTGCCAATTCTGTAGAAGCATACTGTGAGAAAGCAGACAAGGTTGAGCTGGATACAATGGTTCCATCAGATGAAAACCAATGCTTGTGTGTGTTCTGTGGTGAGCTATTTGAAGATGTTTACTGTCAGGAAAGGGATGAGTGGATGTTCAATGGGGCTATTTACCTGTCCAACACTGACGATGATGCTGAGATGGCTTGTAGAAGTGTCATTACTTCTTGTGGTCCCATTATCCATGCAAAATGTTTATCAGAGACCTCAATAATCAGTGCCCCACAGATGGAACAGGTTTAA 3033 0.4359 MDMDNSRRSFDRMGKLGMKKPRLQNELEFDPNQSIRPFPQRQVASGVNLLASARFRTSDRDQGSNDLGRGPQQLLHQDLTTQYKTALAELTFNSKPIITNLTIIAEENVHAAKAIVATICSNILEVPNEQKLPSLYLLDSIVKNIGREYIKYFSARLPEVFCKAYRLVDSSVHSSMRHLFGTWKGVFPLQTLQMIEKELSFTPAANGLSSSSPSTMLKSDSQTQRPPHGIHVNPKYLERQRLQQSNRAIGTANDMIGTIASSTLDTDKPDRAVVTARPWADPRLKMRNIKPANRDAFNDSLPEKSNDASCGGNGQSFTLSSKVGLGIGRTGGRVTDFEHDKIWYKSGSGIGEVSEQRNGLSLKHGSSFHEATKSLNLDAHQLPRQSLTEIHIRSSLISRSWRNSEEEEFMWDNMDSGVTDNTASSVSSNLGKDHWTTDDEGLGPPRSWQLQGHHLLDELNCKVDHTEGFASTGRLPSIMKSSAIMTGNRPFLPNSTAGVVGQHKFHSVQADTPSGGQSPSLQETMCAPHHERNLVEQDHRQTLKPSHLSGDLHGKYIQDPLAAGSSNIQVGKVQKSQHRDLRGPVPSFTYSQPTHCTGVLPKQQPVPSLPEVSDKTENLDQSKVSLASETFDQPASSGLLAAVMKSGILSGSTINNLLSSNFLDTGILPLQPGNQPTPLGGPGGKAASPSSFGSSLDNSSDLTKISQGKVGQPPRASDPPPASSTVCSTSAWTSNSINASSPISNLLSSLVAKGLISAKSESSIKAPNDMLSRLEDQSHSIGTSSSSPVASVSGSPAEHVPSIGDEVDHDANSSVSLSQSTASETRNPVGVEFKPHVIRQFNPSVVSELWDDLLHHCSICGLRLRLKKQFNGHLAWHAMRGKEQNGLIQASRRWYVQSSEWITGKVEYSTESESANSVEAYCEKADKVELDTMVPSDENQCLCVFCGELFEDVYCQERDEWMFNGAIYLSNTDDDAEMACRSVITSCGPIIHAKCLSETSIISAPQMEQV 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2144 1010 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Mibi06g2144 1010 SMART 558neu5 78 200 IPR006569 -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 775 793 - -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 688 707 - -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 209 228 - -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 596 618 - -
Mibi06g2144 1010 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Mibi06g2144 1010 Gene3D - 71 200 IPR008942 -
Mibi06g2144 1010 Pfam CID domain 84 193 IPR006569 -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 1 24 - -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 809 827 - -
Mibi06g2144 1010 CDD CID_Pcf11 82 192 - -
Mibi06g2144 1010 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 39 1000 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 669 729 - -
Mibi06g2144 1010 SUPERFAMILY ENTH/VHS domain 77 204 IPR008942 -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 420 444 - -
Mibi06g2144 1010 MobiDBLite consensus disorder prediction 775 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2144 Mibi-ChrMibi06 41890112 41895495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2144 61 414 C2H2 Transcription Factor Family AT4G04885 38.398 2.79e-53 198