Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2141 ATGTTTGGAAGCAGCAGAAGCAAGTCTTCTTCTTCTTCCTCCTCCTCCAGTACTGGGCGTCACCCTGTTTACAAGGGAGTGAGGCGTAGGAGCAGTGGCAAATGGGTTTCTGAAATTCGTGAGCCTAAGAAGCCTAATCGTATTTGGTTAGGCACATTCCCTACCCCTGAGATGGCCGCCGTCGCCTACGACGTGGCCGCCCTCGCTCTTAAGGGCCAGCACGCCGACCTTAACTTCCCCGACTCCGCTTCTTCTCTGCCGGTGCCGGCGTCTACCTCCCCGTCTGATATTCAGGTGGCTGCGGCCAGCGCCGCCTCCGCCGTCGGGGCTGCTAATGATGCTTTGTCTTCTGCTGCTGGCAATGGGGAGTCTTCTTCTTCTTCTGTGGTGTCGTCCATAATAGACAACGCCGTGGGAGGTAATGAGGAGTTTGTGGATGAGGATTTGATATTTGATATGCCAAATGTGCTCCTCAATATGGCTGAAGGAATGATGCTCGCTCCCCCTCCTCCTCCAATGGATTGGGATTCTGTTGCCTCCCAAGATTACATGTCTCAGGATCCATACCTCTGGAATTTCCGCCCCTAA 588 0.5408 MFGSSRSKSSSSSSSSSTGRHPVYKGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQHADLNFPDSASSLPVPASTSPSDIQVAAASAASAVGAANDALSSAAGNGESSSSSVVSSIIDNAVGGNEEFVDEDLIFDMPNVLLNMAEGMMLAPPPPPMDWDSVASQDYMSQDPYLWNFRP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2141 195 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Mibi06g2141 195 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Mibi06g2141 195 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Mibi06g2141 195 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Mibi06g2141 195 MobiDBLite consensus disorder prediction 1 21 - -
Mibi06g2141 195 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Mibi06g2141 195 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Mibi06g2141 195 MobiDBLite consensus disorder prediction 1 38 - -
Mibi06g2141 195 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Mibi06g2141 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 192 IPR045277 GO:0003700
Mibi06g2141 195 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Mibi06g2141 195 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2141 Mibi-ChrMibi06 41847775 41848362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2141 13 193 AP2-EREBP Transcription Factor Family AT2G36450 61.202 9.46e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi06g2141 AP2 2.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1279 02 12663554 12664183 Mibi06g2141 06 41847775 41848362 CCT
Mibi06g2141 06 41847775 41848362 Mibi06g2141 06 41847775 41848362 ECH