Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2111 ATGGGAGGAAGAGAGCGAGCGAGAAAGAATGAGCTGGATGAGGTGGGAGAAAACGGGGTGGAGGGATTGCTAGAAGGCCAGCTGGTATCTCATTCTGCAATTATTCTTTTGGTTTCGATGGAGAACTTCAATGAAGGTTGTGAACTAAAGGAGTTTCAGACACTAGAAGGTCACTCCGATAGGGTTTGGAGCTTGGCGTGGAACCCTGCTTCTGGGCATTCTGGAATTCCATATGTCTTCGCCTCCTGTAGTGGCGACAAAACCGTTCGAATATGGGAGCAGAATCTCTCCACTGGTCTCTGGGGATGCAAGTCAGTTTTGGAAGAAACACACACTAGAACAGTTCGATCATGTGCTTGGTCGCCATCTGGAAAACTCTTGGCTACTGCCAGTTTTGATGCCACAACTGCAATCTGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTCTAGAGGGTCATGAAAATGAAGTGAAGAGTGTATCGTGGAATGCATCTGGATCTCTGCTTGCAACATGCGGCAGAGATAAATCTGTTTGGATATGGGAAGTTCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACTCAAGATGTGAAGATGGTGCAGTGGCATCCAACAATGGATATATTGTTTTCATGTAGCTATGATAATAAAATTAAGATTTGGGCAGATGAAGGTGACAGCGATGACTGGCAGTGTGTCCAGACTCTAGGAGAACCTAATAATGGTCATACTTCTACTGTGTGGGCTCTCTCCTTCAATACTAGTGGAGACAAAATGGTGACCTGTAGTGACGATCTTACCCTGAAGATATGGGAAACAGACAGCATAAGAATGCAATCTGGAAATGAATTTGCCCCTTGGAGACATTTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGCATCATTGCCAGTGGAGCAGCTGATGATTGTATACGACTTTTTGTGGAGAATAAGGAAAGCCTGGTTGATGGCGGTCCTCTTTATAAATTGCTACTGAAGAAGGAGAAGGCCCATAACATGGATATTAATTCAGTGCAATGGAGCCCTGGGGAGAAGCGGCTGCTAGCCTCTGCAAGCGATGATGGGACTATCAAGGTGTGGGAGCTGCTATCACTGTGA 1170 0.4556 MGGRERARKNELDEVGENGVEGLLEGQLVSHSAIILLVSMENFNEGCELKEFQTLEGHSDRVWSLAWNPASGHSGIPYVFASCSGDKTVRIWEQNLSTGLWGCKSVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTMDILFSCSYDNKIKIWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNTSGDKMVTCSDDLTLKIWETDSIRMQSGNEFAPWRHFCTLTGYHDRTIFSVHWSREGIIASGAADDCIRLFVENKESLVDGGPLYKLLLKKEKAHNMDINSVQWSPGEKRLLASASDDGTIKVWELLSL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 140 IPR001680 GO:0005515
Mibi06g2111 389 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Mibi06g2111 389 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Mibi06g2111 389 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 186 - -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 93 IPR001680 GO:0005515
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 389 - -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 193 IPR001680 GO:0005515
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 282 - -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 228 IPR001680 GO:0005515
Mibi06g2111 389 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 228 - -
Mibi06g2111 389 CDD WD40 53 385 - -
Mibi06g2111 389 PANTHER WD40 PROTEIN CIAO1 49 386 IPR028608 GO:0016226|GO:0097361
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 282 IPR001680 GO:0005515
Mibi06g2111 389 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 47 388 - -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 140 - -
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 389 IPR001680 GO:0005515
Mibi06g2111 389 SUPERFAMILY WD40 repeat-like 49 384 IPR036322 GO:0005515
Mibi06g2111 389 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Mibi06g2111 389 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Mibi06g2111 389 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 47 388 IPR028608 GO:0016226|GO:0097361
Mibi06g2111 389 Pfam WD domain, G-beta repeat 51 92 IPR001680 GO:0005515
Mibi06g2111 389 Pfam WD domain, G-beta repeat 237 278 IPR001680 GO:0005515
Mibi06g2111 389 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Mibi06g2111 389 Pfam WD domain, G-beta repeat 353 384 IPR001680 GO:0005515
Mibi06g2111 389 Pfam WD domain, G-beta repeat 147 183 IPR001680 GO:0005515
Mibi06g2111 389 Pfam WD domain, G-beta repeat 106 139 IPR001680 GO:0005515
Mibi06g2111 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 55 93 - -
Mibi06g2111 389 Gene3D - 73 388 IPR015943 GO:0005515
Mibi06g2111 389 SMART WD40_4 100 140 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 48 93 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 340 385 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 190 229 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 236 279 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 293 332 IPR001680 GO:0005515
Mibi06g2111 389 SMART WD40_4 145 184 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2111 Mibi-ChrMibi06 41610669 41616928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2111 123 389 U-box Gene Family AT2G33340 26.394 2.99e-13 68.9