Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2040 ATGGACTACGAGATTGATGTGCCTCCCTTCTTTATCTGCCCCATCTCATTAGAGATCATGAAGGACCCTGTGACCGTCTCCACCGGTATCACCTACGACCGTGAGAGCATCGAGAAATGGCTATTCTCCGCCAACAACAATATGACATGCCCCGTTACCAAACAACCCCTTTCAAACGACACCGATCTCACCCCCAACCACACCCTTCGCCGCTTAATCCAGGCCTGGTGTACCATCAACGCGTCCTACGGTATCCAGAGAATCCCCACCCCTAAACCTCCCATCACAAAAACCCAAATTGTCAAACTCATTAGAGATTCTTCCCGATCACCTCACTCCTTAACTCAATCTCTCCATCAACTCAAATCCATAGCTTCCGATAGTGAAACAAACAGACGCTGCATGGAAGCTTCTGGTGTTGTTGAGTTCTTAGCATCCATAATCATATCCCAAGTGGATCCCAACCAACAAGACGAGGCCTTAGCCATCCTCCACACCCTCCACGTGTCTGACTCCACCTTAAAATCTCTCATCACCTTCAGAAACGGAGACCTCATTGATTCCTTTACCACAATCATGCACAATGGAGCCTACGAGTCACGAGCCTACGCTGTTCTTTTACTCAACTCCATCTTCCAAGTTGCTGAACCCACACGCTTGTTCAACATAAGATATGAGCTATTCGTTGAGTTAGTACAAATCCTCAAAGATCAGATCTCCAAGCAGGCTACAAATGCCACGTTGCAAATGCTCATCCATCTTTGTTCATGGGGACGAAACAGGTATAGGGCTGTGAAGGTAGGGTTTGTTTGGGCATTGATAGAAAAGCTTGTGGATTGTGAGGAGAGGAAGGTGTGTGAGATGATGATGGTGGCGTTGGATATGTTGTGTGGTTGTGCTGAGGGGAGGGCGGAGCTGTTGAGTCACGCGGCGGGGATCGCCGTCCTGTCGAAGAAGATTTTGAGGGTTTCGGCGACGGCGAACGAGAGGGCGGTGAGGATTTTGTTGTCAGTTTCAAAGTTTTCGGCAACTCACAGTGTGGTGCAGGAAATGATAGAGGTGGGTGTGATGGGGAAGATGTGTTTGGTGATGCAAATGGAGAGTGGGAGTAAGACGAAGGAGAAGGCTAGAGAGATTCTTAAATTGCATGCTCATGCATGCCACAACTCTCCGTGCATGCCTACCAGTTTGGGTTCTTACTTAGCTTGA 1209 0.4847 MDYEIDVPPFFICPISLEIMKDPVTVSTGITYDRESIEKWLFSANNNMTCPVTKQPLSNDTDLTPNHTLRRLIQAWCTINASYGIQRIPTPKPPITKTQIVKLIRDSSRSPHSLTQSLHQLKSIASDSETNRRCMEASGVVEFLASIIISQVDPNQQDEALAILHTLHVSDSTLKSLITFRNGDLIDSFTTIMHNGAYESRAYAVLLLNSIFQVAEPTRLFNIRYELFVELVQILKDQISKQATNATLQMLIHLCSWGRNRYRAVKVGFVWALIEKLVDCEERKVCEMMMVALDMLCGCAEGRAELLSHAAGIAVLSKKILRVSATANERAVRILLSVSKFSATHSVVQEMIEVGVMGKMCLVMQMESGSKTKEKAREILKLHAHACHNSPCMPTSLGSYLA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2040 402 SMART Ubox_2 10 76 IPR003613 GO:0004842|GO:0016567
Mibi06g2040 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Mibi06g2040 402 SUPERFAMILY ARM repeat 99 388 IPR016024 -
Mibi06g2040 402 Pfam U-box domain 7 78 IPR003613 GO:0004842|GO:0016567
Mibi06g2040 402 SUPERFAMILY RING/U-box 3 82 - -
Mibi06g2040 402 CDD RING-Ubox_PUB 11 55 IPR045210 -
Mibi06g2040 402 Gene3D - 98 336 IPR011989 -
Mibi06g2040 402 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Mibi06g2040 402 PANTHER WDSAM1 PROTEIN 4 394 IPR045185 GO:0061630
Mibi06g2040 402 ProSiteProfiles U-box domain profile. 6 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2040 Mibi-ChrMibi06 40855765 40856973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2040 1 397 U-box Gene Family AT2G35930 55.473 1.63e-160 456