Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2036 ATGATCCGCCCGCGTCCAAGGGGTCTCCTTCCTGCTTCCTACCGCAACCCCCATTTGACCTGCGACCAATCCCTCACTATCATCTTCCTCCCTAAAATCCCAACCCTCCTATCTCTCAAACTGCATTTGCTTCTTCAATTCCATTTATTTGTTCGTTCTGTTACAATGAACGACCTCTTCTCCGGCTCCTTCTCCCGCCTCCGCCACGAGCAGGCGTCGCCGGACCACCATGTGATCGAGATGGCGTCCACGGCGGCGCCCACCGGCGGCGTCAACCTCGACAAGTTCTTCGAAAACGTGGAGTCGATCAAGGACGAGCTCAAGGAGCTAGATCGCCTCAACCATAATCTCCAGAGCTCTCACGAGCAGAGCAAAACCCTTCACAATGCGAAGGCCGTGAAGGACCTTCGTTCTCGCATGGACGCCGATGTTTCGCTTTCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAGCTTGAGGCTCTTGAGCGATCTAACGCCGCCAATCGTAGCTTGCCCGGTTGTGGGCCCGGATCATCCTCGGACCGGACCCGAACCTCTGTGGTTAACGGGTTGAAGAAGAAGCTCAAGGACTCCATGGATAGCTTCAATGCCCTCAGGCAGCAGATCTCCTCGGAATATCGCGAGACTGTTCAACGCAGGTATTTCACCGTCACCGGCGAGAATCCCGATGATAAGACCGTTGACCTCTTGATCTCCACAGGTGAGAGTGAGACATTCCTGCAGAAGGCCATCCAAGAACAGGGTAGAGGCAGGATTCTGGATACGATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGCTGGTGGAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCCCAATCGTTTGTGAGGAGCGGAGCTGAACAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACTTGTATCGCCATCATGATTCTACTAGTAATCATTTTGTTTGTGGTTCTCTTCACTGTTAGACCATGGCAAAATAACGGTGGCGGTGGCGGCAATCAGCCAGCTCCAACTCAAACACCTCCTCCTCCGCCTCCAGCTCCGGCTAGAAGATAG 1158 0.5276 MIRPRPRGLLPASYRNPHLTCDQSLTIIFLPKIPTLLSLKLHLLLQFHLFVRSVTMNDLFSGSFSRLRHEQASPDHHVIEMASTAAPTGGVNLDKFFENVESIKDELKELDRLNHNLQSSHEQSKTLHNAKAVKDLRSRMDADVSLSLKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMDSFNALRQQISSEYRETVQRRYFTVTGENPDDKTVDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRSGAEQLQTARKHQKNTRKWTCIAIMILLVIILFVVLFTVRPWQNNGGGGGNQPAPTQTPPPPPPAPARR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2036 385 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 90 220 - -
Mibi06g2036 385 SUPERFAMILY t-snare proteins 91 318 IPR010989 GO:0016020|GO:0016192
Mibi06g2036 385 SMART tSNARE_6 258 325 IPR000727 -
Mibi06g2036 385 Gene3D - 91 223 - -
Mibi06g2036 385 Coils Coil 263 283 - -
Mibi06g2036 385 PANTHER SYNTAXIN 109 344 IPR045242 -
Mibi06g2036 385 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 263 325 IPR000727 -
Mibi06g2036 385 MobiDBLite consensus disorder prediction 362 385 - -
Mibi06g2036 385 CDD SNARE_syntaxin1-like 262 324 - -
Mibi06g2036 385 MobiDBLite consensus disorder prediction 370 385 - -
Mibi06g2036 385 CDD SynN 93 250 IPR006011 GO:0016020
Mibi06g2036 385 Gene3D - 260 356 - -
Mibi06g2036 385 FunFam Syntaxin 132 256 356 - -
Mibi06g2036 385 ProSitePatterns Syntaxin / epimorphin family signature. 269 308 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mibi06g2036 385 SMART SynN_4 88 214 IPR006011 GO:0016020
Mibi06g2036 385 Pfam SNARE domain 299 351 IPR000727 -
Mibi06g2036 385 Pfam Syntaxin 95 298 IPR006011 GO:0016020
Mibi06g2036 385 Coils Coil 93 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2036 Mibi-ChrMibi06 40810250 40812727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2036 81 381 SNARE and Associated Proteins AT3G11820 76.206 1.49e-160 451