Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2009 ATGCTTGGCTTCAAGAGTTTCTTCTCCGATACCAGAAGGATCAACAAAAAGAACAGAAACAAGCGCAAACTCAAAAAAAGACTCGCTTTACGCAAGCAAAAATGTATTTCCCGTAACAATGAATTGCTAGACCGAGATGAAGTGAAGGAAGATAATGAAGGTTTCAGGCTCAAAACATCACACACTCATTGGGTTCAACCTTTGGGAAATCTTTTTTTCTACCCAGGTTCTATCAACTGCAGAGATACAGGTTTAGGTAATCTTCAAACTCTGACTGATGAGCTTGTTCTTGAAATTCTTGGGTTGTTGAGTGGGAACCACTTGGGGGTTTTAGCCACCGTCAGCAAATCATTTTATGTTTTCACCCATCATGAACCCATTTGGAGAAATCTTGCGTTGGAAAATCTTAGTGGTGGCTTTCGGAACAATGGGTCTTGGAAATCTACTTATGTTGGTGCTTGCTGTCCTTCATTTGATGTATCAAACATCACCGTTTGGAATGTTAAAGTTAGAGACTTTTATTCTGATTATATTTTTCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACCAGAATGGCTGGTAAGAGATAATATAGTTCGAAAAAAGGGCATTTCGGTTGAAGAATTCGTCAAGAATTTTGAGGAGCCTAATAAGCCGGTATTGTTAGAAGGATGTCTTGATAATTGGGATGCACTGAAGAAATGGGATAGAGATTATCTGGTACAGTTGTGTGGTGATGTTAAATTTTCAGTTGGGCCAGTGGAGATGAGGCTTGGAGACTACTTTGAGTATTCAGATCAAGTGAGAGAAGAAAGACCTTTGTACCTATTTGATCCAAAGTTTGCTGAAAAAGTTCCCGATTTGAATTCCCAATTTGACGTTCCGGCTTACTTCCAAGAGGACTTGTTTAATGTCTTGGGCAAAGAGAGACCAGACTACAGGTGGATTATTGTCGGGCCAGCTGGATCAGGATCGTCTTTTCACGTTGATCCAAATTCGACTTCGGCTTGGAATGCTGTAATTAAGGGCTCCAAGAAGTGGATATTATTTCCTCCTGATGTGATTCCACCTGGAGTTCATCCTAGCCCTGATGGTTCAGAGGTTGCATCACCTGTTTCTATAATTGAGTGGTTTATGAACTTTTATGGCGAGACAAAAACTTGGAAAAAGAAACCTATTGAGTGCATCTGTAAAGCTGGGGAGGTTGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCTATAACCCAAAATTATGTCAGTAGGAGAAACTTGCTTAATGTCTTGGATTTTCTTAAAAGGCCGAATGCGAGCGTTCTAGTATCTGGGACAAGAGATAGAGTAAATTTGTATGATAAGTTTAGAAATGCTATAGAGGATTCCTTTCCTGGAATAATTGATGAGCTGGCCCGGAAAGAGGAAGAGAAACAGATCCAGAAGAACAAACCTTCCTTCTGGGATTCTGTCACAGATTCTAAAGTGGGAGCTTTCAAGTTCTCTTTCTAG 1530 0.4033 MLGFKSFFSDTRRINKKNRNKRKLKKRLALRKQKCISRNNELLDRDEVKEDNEGFRLKTSHTHWVQPLGNLFFYPGSINCRDTGLGNLQTLTDELVLEILGLLSGNHLGVLATVSKSFYVFTHHEPIWRNLALENLSGGFRNNGSWKSTYVGACCPSFDVSNITVWNVKVRDFYSDYIFQSWLCANLEMKPEWLVRDNIVRKKGISVEEFVKNFEEPNKPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVEMRLGDYFEYSDQVREERPLYLFDPKFAEKVPDLNSQFDVPAYFQEDLFNVLGKERPDYRWIIVGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGSEVASPVSIIEWFMNFYGETKTWKKKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASVLVSGTRDRVNLYDKFRNAIEDSFPGIIDELARKEEEKQIQKNKPSFWDSVTDSKVGAFKFSF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2009 509 Coils Coil 14 34 - -
Mibi06g2009 509 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 85 507 - -
Mibi06g2009 509 SMART cupin_9 275 444 IPR003347 -
Mibi06g2009 509 FunFam F-box protein At1g78280 179 429 - -
Mibi06g2009 509 Pfam Cupin-like domain 208 427 IPR041667 -
Mibi06g2009 509 Gene3D - 83 156 - -
Mibi06g2009 509 SUPERFAMILY Clavaminate synthase-like 199 442 - -
Mibi06g2009 509 Gene3D Cupin 176 429 - -
Mibi06g2009 509 SUPERFAMILY F-box domain 84 151 IPR036047 GO:0005515
Mibi06g2009 509 ProSiteProfiles JmjC domain profile. 284 444 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2009 Mibi-ChrMibi06 40603233 40605579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2009 76 433 Glycosyltransferase AT1G78280 37.265 1.48e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi06g2009 Cupin_8 2.4e-25 CL0029