Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2000 ATGAACAGGATGGAGTCTCAGGTGAAGCATGCAGTGGTTGTTAAAGTCATGGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTTAAGTTTTTGGATGACCATAACCGTTATATCATGAGGAATGTGAAAGGACCCGTGAGGGAAGGAGACATTCTTACCTTACTTGAGTCTGAAAGGGAAGCTAGAAGACTTCGCTAG 207 0.4541 MNRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2000 68 Hamap 30S ribosomal protein S28e [rps28e]. 1 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mibi06g2000 68 CDD S1_S28E 9 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mibi06g2000 68 PANTHER 40S RIBOSOMAL PROTEIN S28 4 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mibi06g2000 68 SUPERFAMILY Nucleic acid-binding proteins 4 68 IPR012340 -
Mibi06g2000 68 FunFam 40S ribosomal protein S28 1 68 - -
Mibi06g2000 68 Pfam Ribosomal protein S28e 7 67 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mibi06g2000 68 ProSitePatterns Ribosomal protein S28e signature. 59 67 IPR028626 -
Mibi06g2000 68 Gene3D - 1 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2000 Mibi-ChrMibi06 40537795 40538001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2000 4 68 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 9.94e-37 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2000 06 40537795 40538001 Mibi06g2000 06 40537795 40538001 ECH