Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1976 ATGGAACTGGCTTTGAGCTTGGGAGATGCACCAAAGGGGTTTCCAATAATGGACAAGGCCCCAAGAATGGGTAATAAGGAAGTTGGTTTCTGCATAGCACTTGGCCATGGTATCCCTGAGAAAGCTTCAGAGCAGAATAATAATGGAAGTCCCCCACAAGTCCAAGATGAAACCAGAGCTTCTTCCTCAGATCCACCTCTTCAGCTTGACCTTCTTCCCTTCACACCCGTTCCTCGATCCCACCAACCTTCCCACCTTCGCATTCCTTGGCTCTCAGATTCTTTTGGATCTCAACGGTTTTCGTCTCCGGAAGGACGAGCGAAAGCGTTGGACGTTAACCGTTTGCCGGCCGCGGCGGGGGCGGAGGAGGACGGCGAGGGTACTCCACTGTCGTCGTCTCCTAACAGTGTGTCGTCATTTCATCACATGGATTTCTACATGAGAAATGGTAATGGAGGTAGTAAAAGCAAGAGGGAGATTGAGGGAGATGGTGAGAGAACTAGTTCTAGGGCCAGTGATGATGATGAGAACGGATCAACTCGGAAGAAACTCAGGCTCTCCAAAGAACAATCAGCTTTTCTTGAAGAAAGCTTCAAAGAACACTCCACCCTCAATCCTAAGCAGAAACTGGTGCTGGCAAAAGAGTTAAATCTTCGTCCACGCCAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGATTGTGAGTATCTGAAGAGATGTTGTGAGACTTTGACAGAAGAGAATAAGAGGCTGCAGAAGGAATTGCAGGAGCTAAGGGCTTTAAAGACATCTCAGCCGTTTTACATGCAACTTCCGGCCACCACTCTCACTATGTGTCCTTCCTGTGAAAGGGTGGCCACTAACTCTTCCTCCTCCAGAACAGTCACTCCCTTTGAACGTAATCATAATAACAATGTCCAGTCTCATCCCACTCCTTCATCATGA 972 0.4815 MELALSLGDAPKGFPIMDKAPRMGNKEVGFCIALGHGIPEKASEQNNNGSPPQVQDETRASSSDPPLQLDLLPFTPVPRSHQPSHLRIPWLSDSFGSQRFSSPEGRAKALDVNRLPAAAGAEEDGEGTPLSSSPNSVSSFHHMDFYMRNGNGGSKSKREIEGDGERTSSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSSSSRTVTPFERNHNNNVQSHPTPSS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1976 323 Coils Coil 243 273 - -
Mibi06g1976 323 CDD homeodomain 181 238 IPR001356 GO:0003677
Mibi06g1976 323 FunFam Homeobox-leucine zipper protein 18 166 242 - -
Mibi06g1976 323 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Mibi06g1976 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 311 - -
Mibi06g1976 323 Gene3D - 185 235 - -
Mibi06g1976 323 MobiDBLite consensus disorder prediction 154 184 - -
Mibi06g1976 323 MobiDBLite consensus disorder prediction 299 323 - -
Mibi06g1976 323 MobiDBLite consensus disorder prediction 128 142 - -
Mibi06g1976 323 SUPERFAMILY Homeodomain-like 171 238 IPR009057 -
Mibi06g1976 323 SMART halz 237 280 IPR003106 GO:0006355|GO:0043565
Mibi06g1976 323 MobiDBLite consensus disorder prediction 41 65 - -
Mibi06g1976 323 Pfam Homeobox associated leucine zipper 237 271 IPR003106 GO:0006355|GO:0043565
Mibi06g1976 323 SMART HOX_1 179 241 IPR001356 GO:0003677
Mibi06g1976 323 Pfam Homeodomain 181 235 IPR001356 GO:0003677
Mibi06g1976 323 MobiDBLite consensus disorder prediction 39 184 - -
Mibi06g1976 323 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Mibi06g1976 323 CDD bZIP 230 269 - -
Mibi06g1976 323 Pfam HD-ZIP protein N terminus 26 139 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1976 Mibi-ChrMibi06 40300906 40302161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1976 23 301 Homeobox Transcription Factor Family AT5G47370 49.123 7.88e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi06g1976 HD-ZIP_N 0.00012 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1100 02 10919157 10920318 Mibi06g1976 06 40300906 40302161 CCT
Mibi06g1976 06 40300906 40302161 Mibi06g1976 06 40300906 40302161 ECH