Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1975 ATGGGAGAACAGACATCGGATCCGATGAACCTTGATTTGAATTTGGGTCCCATTCCTGAGCCACCAGCCAACTCCATAGCCGCCGAACATGTGGTCTTACTGGATGACTGGACCGATCGACCTTTTCACCCAGTTAATGACGCTCGTCGGAACAGGTCTCGACTACAATGGAGATCCCAGAATCTTCTTGTCCCACCGCCTGAATCTCAAAATATTCCCATGGTATTTGATCAATTTGTGGAAACCCCTGCCATTAGGACTTCCCTACAGGCTGCTCAAGACGGTGTTCTTGAAGCTGACCTAACATCAGAGGACGTACCAAAAGAATGTGAGAATAACAACAGCTTAACCAGGGATGATGGGGAATTAGAGAAGAAGGATGATGTTGATAAGGGTATTGGCAATGATGGGAGCTTTTTCGATTGTAATATCTGTTTGGACCTGGCCAAGGACCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTGCATATGCATTCAGCTGCTAAGGAATGTCCTGTTTGTAAGGGCGAGGTGTCATACAAAAACATCACCCCAATATATGGTCGTGGGAACAACAGTGTTCAAGACCCTGAAGAAGATCCCACCCTTAAAGTCCCCCTCAGGCCTCATGCAAGACGTGTTCAGAATTTAAGACCAACCTTACAGAGAAGTGCATTTGGGAATTCCATGGAGGATATGATTAGGCGTTTTGGAGGAGGAAGAGTTGATCTTTCTCGTGGTTTGGTACCCCCGCATGAGCCTGAGACCGTGCGTGAAACTGCAGAGAGAACAAGCTTATTGCTAAACAGGTTTTTGACGTCTCGAGCAATTAGGAGAGAACAAAGTATCGAAGCAACCCCAGATGATTCGGGATATCTAACTGGTAATCTTGAGGCAGAGGATAGTCGCAGGCTGCAATCTCTTCTGCTTCGAAGAACACATTCACACAGAGCAACACTCTCATCTTTTTCCTCAGCTTTAAACTCTGCGGAGCGAGTAGTAGAGACATATTTCCGGACTAGAAACCAAGAACAAGCTGTACCACCTGCACATGTGGATGATAGAGATTCGTATTCAAGCATTGCTGCTGTTATGAATTCAGAGAGTCAAATGGACACTGAAATTGATTCCACGGTATCCTTGTCCACATCCTCTTCCAGAAGGAGGAATGATTCTTCTAGAGTTACTGATGTAGATAATGGAGACTCTCGTGGTCCAAGGCCTAGGCGAAGACGTTTACATTGA 1269 0.4594 MGEQTSDPMNLDLNLGPIPEPPANSIAAEHVVLLDDWTDRPFHPVNDARRNRSRLQWRSQNLLVPPPESQNIPMVFDQFVETPAIRTSLQAAQDGVLEADLTSEDVPKECENNNSLTRDDGELEKKDDVDKGIGNDGSFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHMHSAAKECPVCKGEVSYKNITPIYGRGNNSVQDPEEDPTLKVPLRPHARRVQNLRPTLQRSAFGNSMEDMIRRFGGGRVDLSRGLVPPHEPETVRETAERTSLLLNRFLTSRAIRREQSIEATPDDSGYLTGNLEAEDSRRLQSLLLRRTHSHRATLSSFSSALNSAERVVETYFRTRNQEQAVPPAHVDDRDSYSSIAAVMNSESQMDTEIDSTVSLSTSSSRRRNDSSRVTDVDNGDSRGPRPRRRRLH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1975 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 115 327 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mibi06g1975 422 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Mibi06g1975 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 207 IPR013083 -
Mibi06g1975 422 SUPERFAMILY RING/U-box 138 195 - -
Mibi06g1975 422 MobiDBLite consensus disorder prediction 398 414 - -
Mibi06g1975 422 Pfam Zinc finger, C3HC4 type (RING finger) 142 182 - -
Mibi06g1975 422 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Mibi06g1975 422 MobiDBLite consensus disorder prediction 103 129 - -
Mibi06g1975 422 MobiDBLite consensus disorder prediction 373 422 - -
Mibi06g1975 422 FunFam Zinc finger family protein 123 196 - -
Mibi06g1975 422 SMART ring_2 142 182 IPR001841 -
Mibi06g1975 422 MobiDBLite consensus disorder prediction 373 397 - -
Mibi06g1975 422 CDD RING-HC_AtRMA_like 140 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1975 Mibi-ChrMibi06 40284041 40285309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1975 1 411 C3H Transcription Factor Family AT3G58030 47.738 3.64e-107 322