Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1960 ATGGATGCCCGCAAGAGAGGAAGGGTTGAAGCTGGACCCAATATTAATGGAGGAGGTTCCAAAAAGTCCAAGCAAGAAATGGACTCCTTATCATCTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGTCCATTTGGTGAGAGTTGCCACTTCTTGCACTATGTTCCTGGCGGTTACAATGCTGTTGCACAAGTGATGAATTTAGCTCCAGCTGTGCCTCCAGTGTCTAGAAATGTTGCCCCACCACCCGTCCCTAATGGGGCTGCACAGCTGACTGTTAAAACCCGCATATGCAACAAATATAATACTGCTGAAGGCTGCAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAAATTGGTAAGCCTATTGCTCCATCAATGGATGATCGTCGTCCAATGGGACCTATTTCGAGCCATTCAGCTGGTCGAATGGAGCCTCCTCCAGGTCATGTTGCTAGTTTTGGTGCCAATGCCACTGCTAAGATCAGTGTTGAAGCTTCATTAGCTGGAGCTATCATTGGAAAGGGTGGTGTGAACTCCAAGCAGATCTGCCGACAAACTGGAGCTAAACTATCAATTCGGGATCACGAGTCAGATCCGAATCTTAGGAACATTGAACTTGAAGGTAGTTTTGAGCAAATTCAGAATGCAAGCAACATGGTAAAAGAGTTGCTGGTGACATTATCCATGTCGGCGCCACGTAAAACTCATGGAGCTCCTGGAGCTCCTGGAGCACCAGGCTCTCATGGAAGTAACTTAAAGACAAAGCTGTGCGAGAATTTTGCTAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCTCATGGGGCTGCTGAATTACGTAAATCAGGAGTATGA 891 0.4669 MDARKRGRVEAGPNINGGGSKKSKQEMDSLSSAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQVMNLAPAVPPVSRNVAPPPVPNGAAQLTVKTRICNKYNTAEGCKFGDKCHFAHGEWEIGKPIAPSMDDRRPMGPISSHSAGRMEPPPGHVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIQNASNMVKELLVTLSMSAPRKTHGAPGAPGAPGSHGSNLKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1960 296 FunFam Zinc finger CCCH domain-containing protein 95 131 - -
Mibi06g1960 296 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Mibi06g1960 296 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Mibi06g1960 296 CDD KH-I 169 232 - -
Mibi06g1960 296 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 138 IPR045877 GO:0003729
Mibi06g1960 296 SMART kh_6 166 236 IPR004087 GO:0003676
Mibi06g1960 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 287 IPR000571 GO:0046872
Mibi06g1960 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Mibi06g1960 296 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Mibi06g1960 296 MobiDBLite consensus disorder prediction 1 37 - -
Mibi06g1960 296 Pfam RNA-binding, Nab2-type zinc finger 40 60 - -
Mibi06g1960 296 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Mibi06g1960 296 Gene3D K Homology domain, type 1 163 260 IPR036612 GO:0003723
Mibi06g1960 296 Pfam KH domain 170 233 IPR004088 GO:0003723
Mibi06g1960 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Mibi06g1960 296 FunFam Zinc finger CCCH domain-containing protein 257 293 - -
Mibi06g1960 296 MobiDBLite consensus disorder prediction 18 37 - -
Mibi06g1960 296 Gene3D - 96 131 - -
Mibi06g1960 296 Gene3D - 261 294 - -
Mibi06g1960 296 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Mibi06g1960 296 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Mibi06g1960 296 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Mibi06g1960 296 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Mibi06g1960 296 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Mibi06g1960 296 SMART c3hfinal6 99 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1960 Mibi-ChrMibi06 40159113 40161926 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi06g1960 KH_1 1.5e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1083 02 10735683 10740541 Mibi06g1960 06 40159113 40161926 CCT