Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1959 ATGGAAAAGATAGAGTCGATCTCATTCAAGTTCTTATATTCAGCTCTCCATCTCAGTCTCGAGCCATCGGAAAAGTGTCAGCAGTGGAAGGAAGATAGTGCGGCTAAATATTTGGAAAGGGCAGTTCAGGGAACTGTGCCTTATGGTTTGCACTTGAGTTCTGATATACAAGTTAGAAATCTAATGGCGTCTAAAGGTCCGAGGTCAAAGATTGATCATGAGAGCAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCACGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCCCTGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGATTAAGGAAAGTTGCGCTAAATATTTCAAAGGATGTTAAGAAATTTTGGATGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGATACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTGTTAAACCAGGTGAGAAACAGTCACCGGAGCATCATAGGAGTGCCCAATACAAAGGAGTAGATGAAGATGTTATCGACAACTATAACGAAGCTAATGCTGAGTTTCAGTCAGATCCAATTGACAATGATGAAGAATATGACGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACCGAAGAAGAAAGGCAAGAGGAGTTGGTGGCTTTGCACAATGAAGTTGATCTTCCTATTGAGGAGTTACTGAAGCGTTATTCTGGGCAGAAAGCAGGACCACTTAGTCAAGAAAGTAGTCCAGAGCACAGTGATGATTATGATACAGAAGTCAGAGCTGGTGATGGATATGAAAACGGAGACAATAATTTATCTATTATCAAGCCTGGCTCAAGCAACCCCAGCATGTTCTCTGGTCGTCGTTGTGATGAAAGTAATGGTGGGCTAGCTACACTGTCTGAGAATGTAGTCAAAGATAAGGCCTGTGAATCTGAAAATCTTACATATGATTTTAGTGATGAAGAGGAAGATGGCGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCTGAGGAGGAAAAAATGGAAAAAATAGATGCAATTGATCCAAAGGATGAGATTGCTTTATTACAAAGGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTATGCCAGTGGCAAACCTCGGGAAGATGAATCTGATGCTGCTTCTTCTTTATCCGAAGACCTTTCGGATTCTCCACTGAATGAAGATGATAGGAAGAAGGATCCTGCTGTTTCTGTAGATGAAGATGTCAAGCCTGTCGAGCACATGGCTTTATTACAGTCCCAGACTGAAGAAGAACAGGGGGAAGTGCCTTCTGAAAAACTGGAGGGAAGGGATAGTGAAGATCTGATAGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCTTTTCTCCTGAAGTACCCTCTCCGTGAGTACCAACACATTGGATTGGATTGGCTTGTAACAATGTATGAAAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGTCCACATCTCATTGTGGTACCAACCAGTGTCATGCTTAACTGGGAGACTGAATTTCTTAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTACCGGTTAATCATTCAGGATTCTAAGGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTGGATGAAGCCCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAACTCGAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTCAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGGGAAGAAAAAGTGAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAAAAGCAACTTCCAAGGAAACATGAGCATGTCATATACTGTAGATTGTCTAAAAGGCAGCGGAACTTGTATGAAGATTTCATTGCTAGTACAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTGTTATAATGCAGCTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATCATCAGTTCTTATGATATGTGGGCCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCTGTGTTCTCAACCAGCCCCTTTTCATCAGTAGACTTAAGAGGTTTTGGATTTCTATTTACTCATCTTGATTATAGTATGACTTCATGGGAGACTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATTATGGAGCGTGCTGATATGAATGACCTACAAGTAATCAGGCCTAAATCAAAGGATCAGAAGAGTTCTCAAGGAACTAACATTTTTGAGGAGATTCAGAGGGCCATTTGGGAGGAGAGGCTGAGAGAAGCAAAGGAACGTGCAGCAGCAATTGCATGGTGGAATTCCTTGAGGTGTAAAAAAGGGCCCGTCTATTCAACAAACCTACGGGATCGTCTCACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACATGTATTCCTCCAAGCTAGCTGACATTGTCCTCTCACCAATTGAACGTTTCCAAAGGATGGTGGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTCTACTGGTGCAGTAGAAGTGAAACACCAGTGTTTATTCATCCATCATACAAACAGAAATGCTCTGAAGTCTTGTCACCCCTATTGTCTCCAATCAGGCCTGCAATTGTCCGACGTCAGGTGTATTTTCCGGATAGGCGACTTATACAATTCGACTGTGGGAAACTGCAGGAGCTTGCAAGCCTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACTCAGATGACAAAGATGCTCGACATACTGGAGGCTTTCATTAATTTGTATGGCTACACTTACATGAGATTAGATGGCTCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGAAGTGGGGGTGTTGGTATCAATCTGGTTGGAGCCGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGTACCATTGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCGCTTGATGATTTAGTTATACAGAGTGGTGGTTATAATACTGATTTTTTCAAAAAGCTCGATCCTATGGAATTATTTTCAGGTCATAAAACACTTCCAGGGAAAAACATGCAGAAGGAGAAAAGCCAGACCATTGGGGATGAAGTTTCTGTAAGTAATGCAGATTTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGATGAGGATGAGTATGTTAACGAGGATGACACGAAGGTTGATGAGCCCTCTGAAGTAGCTGAATCAGTTTCAAAGTCAAGTAAAGAGAATGCTTTAATGCTGGTTGGAAGTGATCCTAAGGAAGAAAGACCGCTCTCTGTATCTATCAAAGAAGATGATATTGACATGCTGGCTGATGTCAAGCAGATGGCTGCAGCGGCAGCGGCGGCTGGACAAACTATTACAGCCTTTGAGAACCAGCTACGGCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCGATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAATTGGAACGTATTGAGAAGTACAAAGATGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAAAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGCGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGACCTAAAAAGAAACCTAAGAAAGCCAAGTTTAAATCCCTGAAGAAAGGAGCTTTAGCCTCTGAATCCAAACCTATGAAAGAACAACAACAAGCAGACCCAATGTCTATAGATGATGAGATTGTCACTCGCCTGGACCTGGGGTCTCCAAATTCAAGTATGCAGAAAAAACGTAAAAAGCCTAAATTTACAGCTTATGGCGAAGAAGAGAAGACACTTAAGAAGTCCAAGAAGACCAAGAGGGCTGCCGATATCTGTGCTTCAGATTCAGATGATGTCTTGTTAGGTTTGCCAGATGAACATGCAGAGTCAAAGCAATGTGAAAGTGTGGTTGAATCTGAACCGAAACCTCCCAGCAGGAGTAAAATGGGGGGGAAAATATCCATAACTCCAATGCCAGTCAAACGGGTTTTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCTTGGACCAAAGATGGGGTTCCAGCAGCTGATTTTTGGCTGCCACAGGAAGATGCAATTTTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTCTATGGTATGACTGCTGGAGGATCATACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTCCAAAGATATGTTTTGTCAACGGCAGACAATGCTAATCATGAGAGGGGCAACAATACTGCCTCTGGAAAGTCTCTTTTGAAAGTTACGGAGGATAACATTCGGATTTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGGGAGTTATTATTGCAGAAGCATTTTTTTGCTCTGATTTCTTCTGTCTGGAAGGCGTCATCACGGGTTGATCGAAGGAAAAATCCACCACCGACACAAAATGGCCACTATTTTGATCATAGTTTCTTTACTTCCATGGGCTATGATTCTCAGAGCCTTCTGAAGAAGCCTTCTGGAAGGATGACTGTCACCAATCTGGCCCAGAGCAGAAAGTTATTAGCTTCTGCACTTGATGACTCTAGTTGTAGGCAACAGGATGATAAAATCTCTCTATCAAATCAAGGTGAAAATGTTGAAAATGTGCTGGTGGCTACCGATCAGCTGGATGTGACACTGGAATTCCCGAAAGACGAGAGTGACACATTAGTCTCATTTCCATCCGTTATAAATTTATCCATTCAAGGGGCAGAGCCCTTACCATCGTTGATTTCCCCTAATGGGGACAATCATCATTTTCGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCAGCCAGAGCATGCGAGGAAGATAGTTATGGATGGGCTTCCTCAGTGTTCCTAACAAATGATTCAAGGTCCAGACCAGGATCTAAGATACAAACTTCAGGAAAGCACAAGTCTTCCATCTCGGAGTCCGTCAAGCCTTCAAAATCGAAGTCCAAACGAAATTCAGTGGATACTAGTGAGATGCGTCACCAACAGGTTGAGCCATTATTCCATTCAATGCCATCACTTCCAGCTAAGGATTTGAGGATTGATCTTAATTCATTAGCAACGGAAGAAACAGTGACTTATGACATGGATTGCAGCCTGCCATATGACCTAAATGAGGAAAATTCGTTGGAAACAGAGAATTTAGGCGTTGCCCCACTTGATTTCGTTGCTGGCCTAATCTCAGGCCTTGATGATTATTCAGAATTTTCAGAATTTACAGATATTGGATAA 6318 0.4218 MEKIESISFKFLYSALHLSLEPSEKCQQWKEDSAAKYLERAVQGTVPYGLHLSSDIQVRNLMASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLALAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAVKPGEKQSPEHHRSAQYKGVDEDVIDNYNEANAEFQSDPIDNDEEYDVQSDDESEDDEQTLEEDEALITEEERQEELVALHNEVDLPIEELLKRYSGQKAGPLSQESSPEHSDDYDTEVRAGDGYENGDNNLSIIKPGSSNPSMFSGRRCDESNGGLATLSENVVKDKACESENLTYDFSDEEEDGDFLLATEDNDDETTLSEEEKMEKIDAIDPKDEIALLQRESDMPVEELLAMYRKYASGKPREDESDAASSLSEDLSDSPLNEDDRKKDPAVSVDEDVKPVEHMALLQSQTEEEQGEVPSEKLEGRDSEDLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPRKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIISSYDMWAIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWETDEVKAIETPASLIMERADMNDLQVIRPKSKDQKSSQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKGPVYSTNLRDRLTIRHPVYDIHQVKANPRSYMYSSKLADIVLSPIERFQRMVDVVESFMFAIPAARAPPPVYWCSRSETPVFIHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELASLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTDFFKKLDPMELFSGHKTLPGKNMQKEKSQTIGDEVSVSNADLEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYVNEDDTKVDEPSEVAESVSKSSKENALMLVGSDPKEERPLSVSIKEDDIDMLADVKQMAAAAAAAGQTITAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRIEDTEWELERIEKYKDEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCDPGKIQTPRDSKPRPKKKPKKAKFKSLKKGALASESKPMKEQQQADPMSIDDEIVTRLDLGSPNSSMQKKRKKPKFTAYGEEEKTLKKSKKTKRAADICASDSDDVLLGLPDEHAESKQCESVVESEPKPPSRSKMGGKISITPMPVKRVLTIKPEKVKKGNAWTKDGVPAADFWLPQEDAILCAVVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQRYVLSTADNANHERGNNTASGKSLLKVTEDNIRILLDVASEQENRELLLQKHFFALISSVWKASSRVDRRKNPPPTQNGHYFDHSFFTSMGYDSQSLLKKPSGRMTVTNLAQSRKLLASALDDSSCRQQDDKISLSNQGENVENVLVATDQLDVTLEFPKDESDTLVSFPSVINLSIQGAEPLPSLISPNGDNHHFRACGSVAEDRFREAARACEEDSYGWASSVFLTNDSRSRPGSKIQTSGKHKSSISESVKPSKSKSKRNSVDTSEMRHQQVEPLFHSMPSLPAKDLRIDLNSLATEETVTYDMDCSLPYDLNEENSLETENLGVAPLDFVAGLISGLDDYSEFSEFTDIG 2105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1959 2105 Gene3D - 809 865 - -
Mibi06g1959 2105 SMART helicmild6 1134 1217 IPR001650 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 246 295 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 310 363 - -
Mibi06g1959 2105 FunFam Photoperiod-independent early flowering 1 533 808 - -
Mibi06g1959 2105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 1281 IPR027417 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1983 2000 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 214 234 - -
Mibi06g1959 2105 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1108 1258 IPR001650 -
Mibi06g1959 2105 SMART ultradead3 559 752 IPR014001 -
Mibi06g1959 2105 Coils Coil 1497 1520 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1637 1662 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 66 92 - -
Mibi06g1959 2105 ProSiteProfiles Myb-like domain profile. 1697 1750 IPR001005 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 2001 2020 - -
Mibi06g1959 2105 FunFam Photoperiod independent early flowering protein 1693 1754 - -
Mibi06g1959 2105 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1070 1324 - -
Mibi06g1959 2105 ProSiteProfiles HSA domain profile. 83 155 IPR014012 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 455 497 - -
Mibi06g1959 2105 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 575 740 IPR014001 -
Mibi06g1959 2105 CDD DEXQc_SRCAP 563 785 - -
Mibi06g1959 2105 PANTHER HELICASE SRCAP-RELATED 74 2008 - -
Mibi06g1959 2105 Coils Coil 1322 1342 - -
Mibi06g1959 2105 Pfam Helicase conserved C-terminal domain 1105 1217 IPR001650 -
Mibi06g1959 2105 Gene3D - 1679 1754 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 322 336 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 250 284 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 345 361 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1508 1534 - -
Mibi06g1959 2105 CDD SF2_C_SNF 1093 1228 - -
Mibi06g1959 2105 Coils Coil 267 287 - -
Mibi06g1959 2105 Pfam HSA domain 88 154 IPR014012 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 217 234 - -
Mibi06g1959 2105 Gene3D - 1074 1324 IPR027417 -
Mibi06g1959 2105 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3 809 869 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1983 2023 - -
Mibi06g1959 2105 Gene3D - 532 808 IPR038718 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1508 1611 - -
Mibi06g1959 2105 SMART bromneu2 84 155 IPR014012 -
Mibi06g1959 2105 Coils Coil 1449 1469 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1596 1611 - -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 1535 1549 - -
Mibi06g1959 2105 Pfam SNF2-related domain 580 852 IPR000330 GO:0005524|GO:0140658
Mibi06g1959 2105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 785 IPR027417 -
Mibi06g1959 2105 MobiDBLite consensus disorder prediction 476 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1959 Mibi-ChrMibi06 40140598 40155825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1959 583 855 RAD5 or RAD16-like Gene Family AT5G43530 29.193 2.13e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi06g1959 SNF2_N 2.2e-70 CL0023