Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1949 ATGACTTCCCCCTCTGCTACTGAAGCCTCCGCCTCCGCCTCCGCCGCCGCCTCGACGGAGTCGCTGAACGGCCTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGTGGTGCGGTGAAATCCGGCGGTGGGGCTTCTTCTTCTTCGTCGGCGGCGGCGGCTAAGAAGGGGAGGGGAAGTGGTGGGGGTCAGGGGGCTAATCAGCCTCCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAATATGCACTCCAAATCCCCCAGGGTCGTTGTCGCTGGTCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAACTTTCTGAGTTTGATCAAGTAAAACGAAGTTGCCGCAGGCGGCTTGCTGGTCATAATGAACGGAGGAGAAAACCCCCACCCAGCTCCTTGATGGCTTCACGATATGGCCGACTTGCTCCAGCTAATTTCGATAACAGCAATAGCAGAGGTGGTGGATTTCTAATGGAATTCGCCTCATATCCCAAACTTAGCCTGAGAAATTCCATGCCCACACCAACATCATCCGAGCAGCTTCCTGGGAATCCAACAGTGACAGTTCCATGGCAGGGCCATTCGGAGTCTCCATCATTGCTTTTCTTGCAAGCAGGTTGTTCTCCAGTTGGTGGGACAAGCTACTCTGGATCCAGAAATTCTTCATCAGGGGAAAGCTTTTCGGGATTGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGTCCCTCGAAACAGAGCACCAGGTCTTGGTACAAATAATTTGATGAGCTTTGACGACACGCCCATCACACACCTCCCTGCAACTTCTCATCACGGACACGGAACCTCCCTCCACCATCAGCTTTCAAATGCCTCATGGTGTTTCAAGGGCATGGATGCTGCTGCTGATAACTGTTCTCATGACATTGTCCCTGACCTTGGCCTCGGTCACCAAATATCGCAGCCTATCAGCAGCCCTCTTCCTGGGGAGCTTGACGTGTCACAGCAGGGTCGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTCTATGATGATTCTCAGCATCACATGCATTGGTCTCTTTAG 1137 0.5224 MTSPSATEASASASAAASTESLNGLKFGQKIYFEDVGGAVKSGGGASSSSSAAAAKKGRGSGGGQGANQPPRCQVEGCKVDLSDAKAYYSRHKVCNMHSKSPRVVVAGQEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLMASRYGRLAPANFDNSNSRGGGFLMEFASYPKLSLRNSMPTPTSSEQLPGNPTVTVPWQGHSESPSLLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWVPRNRAPGLGTNNLMSFDDTPITHLPATSHHGHGTSLHHQLSNASWCFKGMDAAADNCSHDIVPDLGLGHQISQPISSPLPGELDVSQQGRRHYMDLEQSRVYDDSQHHMHWSL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1949 378 FunFam Squamosa promoter-binding-like protein 14 64 134 - -
Mibi06g1949 378 MobiDBLite consensus disorder prediction 137 156 - -
Mibi06g1949 378 Gene3D - 63 134 IPR036893 GO:0003677|GO:0005634
Mibi06g1949 378 SUPERFAMILY SBT domain 71 152 IPR036893 GO:0003677|GO:0005634
Mibi06g1949 378 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 309 IPR044817 GO:0003677
Mibi06g1949 378 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Mibi06g1949 378 Pfam SBP domain 73 146 IPR004333 GO:0003677
Mibi06g1949 378 MobiDBLite consensus disorder prediction 40 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1949 Mibi-ChrMibi06 40026831 40029724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1949 25 378 SBP-box Gene Family AT2G42200 42.063 1.99e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mibi06g1949 SBP 2.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1949 06 40026831 40029724 Mibi06g1949 06 40026831 40029724 ECH