Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1928 ATGGAGCAAACTACAGGAGGAGGCCTATCTGGATCCAGTCTTGCTATTCGTGAGAACAACGATAAGACTGCGCTTGAATCCATCCAATTTAACCAAGAAATTCAGGGAATCATGGCTCCTCCTCCCCCGGAAAACTCGAGCTCCTTCACTGCACTTCTTGAACTTCCACCACCGCAAGCCGTGGAGCTCCTTCACTCGCCGGACGGCGCGTCTGCCAAATCGCTTCCCCAAATCGAAAATCAGAAACCCTATTTATTCCACTCTTTCAGTGGCAATTTAACTTTCCCTGCTAACGCCGCTTTGATCGATCGCGCTGCTAAGTTCTCTGTCTTTGCCGGCGACAATTCGGGTGCCAAGTTGGGAAAAGTAAAGAATGAGCCACCAGAAAGCGATTCGAATCCTAGCCCAATGCAGGCTTGTGTTTCTGATCCCACCGTTGAGAACCTTAACCAGAGGGTTGCCAAGAGGAAGGAGCGAGAGAAGAAGGGCTCCTCAAAGAAGAGTAAAGGCGTCGCCGACGAGGCCTCCGGTGAAGCTGAAAAGCTTCCCTACGTTCATGTTCGAGCTCGACGAGGTCAAGCTACAGACAGTCATAGCTTAGCAGAAAGGGCGAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGATATCAGGAACTGCATTGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGGCAAGTGGAGTTCTTATCAATGAAATTGGCTGCGGTTAATCCAAGAATTGACTTCAACCTTGACAGCATACTGGCTACAGAAGGTGCATCTCTCATGGATTGTAACTTCCCCAGCACGGTTGCGCCTTTGATGTGGCCAGAAATCCCAGTCAATGGAAACAGACAGCAATACCAACAACAGTGGCAAGTTGATGCATTCCAACAACCAGTTTGGGGGAGAGAAGAAGGAAACCATAATTTTATCACTTCAGATAACTCTTTTTTGAGTTATGACTCGTCAGCAAATTCAGCAACTCTGCGGTCAAATCAGTTGAAGATGGAGCTCTGA 1062 0.4821 MEQTTGGGLSGSSLAIRENNDKTALESIQFNQEIQGIMAPPPPENSSSFTALLELPPPQAVELLHSPDGASAKSLPQIENQKPYLFHSFSGNLTFPANAALIDRAAKFSVFAGDNSGAKLGKVKNEPPESDSNPSPMQACVSDPTVENLNQRVAKRKEREKKGSSKKSKGVADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFNLDSILATEGASLMDCNFPSTVAPLMWPEIPVNGNRQQYQQQWQVDAFQQPVWGREEGNHNFITSDNSFLSYDSSANSATLRSNQLKMEL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1928 353 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983
Mibi06g1928 353 FunFam transcription factor bHLH48-like isoform X1 190 262 - -
Mibi06g1928 353 Gene3D - 190 263 IPR036638 GO:0046983
Mibi06g1928 353 MobiDBLite consensus disorder prediction 117 178 - -
Mibi06g1928 353 MobiDBLite consensus disorder prediction 128 149 - -
Mibi06g1928 353 SMART finulus 199 249 IPR011598 GO:0046983
Mibi06g1928 353 MobiDBLite consensus disorder prediction 26 50 - -
Mibi06g1928 353 Coils Coil 233 253 - -
Mibi06g1928 353 MobiDBLite consensus disorder prediction 150 178 - -
Mibi06g1928 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 96 336 IPR024097 GO:0006355
Mibi06g1928 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 243 IPR011598 GO:0046983
Mibi06g1928 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 262 IPR036638 GO:0046983
Mibi06g1928 353 CDD bHLH_AtBPE_like 183 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1928 Mibi-ChrMibi06 39799394 39804018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1928 7 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.094 4.76e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi06g1928 HLH 1.3e-05 No_clan