Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1922 ATGGAGGCCGATAATGGCGACACCAAGTCCAAGATGGATGACTATGAAGTTATTGAGCAAATTGGCAGGGGAGCTTTTGGCTCAGCTTTTCTTGTTCTCCATAATTCTGAGAATAAGAAATATGTGTTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATCGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAATTTGAAGAAGGCTCGGGGATCATATTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGCTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTGCATAGAGACCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACGACATTCGTCTAGGTGACTTCGGTCTGGCAAAGTTGCTTAATTCAGAAGATCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAACTACTGGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTAGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCATTTCGTGCTCCTGATATGGCTGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCAACATTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAGGTGTTAAGGCATCCTCTTTTGCAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTACTTCCAGTGTATCCCATAGTCAACTTAAAGGATAAAACAAAGAAGTCTTATAAATCTAGTGCCAGAAAAGAACGTAAGGACAAAGAAGTCGGATTAGAAAATATTTTGGTTAGGATTCATCCATTAGAGGGAAATGAAGATCTGCCTAACAATGGCAAGCTATCTGTCTCAAGCAGTGCAGAAGACATTCTTCAGACCAATCTGGCTGATCCTACCAACTTCATAACTGAATCATCTACTAGCATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGAAGCAGAATATAAAAGTATACCTACAAGGGAGACAACTGTCATTGAAATTACATCAAAGAGTATGCCAAGTCCTAAGCATGAAGAACAAGTATTTGCTGCCGAAGGACTTCAAAAATCAGAAGGGGTTGACACAATCGCAGCGACCACGAAAGTCAAAGATGCTTTACCTAATGGAGATTTCAATAAAGCTGAAGCGCAGAGAGATGTTAATCTCGAGGACTTCAGGAAATCAACAGCATCAAGCGAAGGAAGCTCAGATAAAGGAGGGTCTCTTGATGAGGAAATGTCGCTACCAGCGTTGCAGCCTGGTAGTAAGGTTGAAGATAACTCTGAATCAGAAAGAGTCTACTCACAGAAAAGGGAGGGCCCAGATACACATACAGAAGACTCACATATGTGCTTATCTTCTGAGAATAATGATACACTTGCAGGTAAGGATGAAGGCAGAGAAAAGCCACATGAACTCAGTTGCCCCACACATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCAAGTGACAATTCATTAGGTACACTCACTGTAATAGGGGGTGATGAAGCCAAGAGCGAGTTGGATAATTCTTGCCAGGAAAGAGCTCATGCTCTAGAGACTTTACTCGAATTATGTGCTGAGCTACTGAAGCAAGACAAACTTGAAGAGCTGGCTGGTGTGCTGAGACCATTTGGGCCGGAAGCTGTCTCTTCGAGAGAGACTGCAATATGGTTAACAAAGAGCCTCATGTCTGCACAGAAATTCAATACTGAAACATAG 1932 0.4203 MEADNGDTKSKMDDYEVIEQIGRGAFGSAFLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENLKKARGSYFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAEVLRHPLLQPYVLRCRNASSNVLPVYPIVNLKDKTKKSYKSSARKERKDKEVGLENILVRIHPLEGNEDLPNNGKLSVSSSAEDILQTNLADPTNFITESSTSISGSKDGSTTSESTICSMCKEAEYKSIPTRETTVIEITSKSMPSPKHEEQVFAAEGLQKSEGVDTIAATTKVKDALPNGDFNKAEAQRDVNLEDFRKSTASSEGSSDKGGSLDEEMSLPALQPGSKVEDNSESERVYSQKREGPDTHTEDSHMCLSSENNDTLAGKDEGREKPHELSCPTHKENDSACVVDQTPSDNSLGTLTVIGGDEAKSELDNSCQERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1922 643 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Mibi06g1922 643 MobiDBLite consensus disorder prediction 527 545 - -
Mibi06g1922 643 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi06g1922 643 CDD STKc_Nek 14 269 - -
Mibi06g1922 643 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Mibi06g1922 643 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Mibi06g1922 643 MobiDBLite consensus disorder prediction 492 518 - -
Mibi06g1922 643 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi06g1922 643 MobiDBLite consensus disorder prediction 440 558 - -
Mibi06g1922 643 Gene3D Transferase(Phosphotransferase) domain 1 97 321 - -
Mibi06g1922 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 541 - -
Mibi06g1922 643 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi06g1922 643 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Mibi06g1922 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Mibi06g1922 643 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1922 Mibi-ChrMibi06 39724180 39729079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1922 21 270 MAP Kinase Kinase Kinase AT1G53570 32.157 1.61e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Mibi06g1922 Pkinase 1.3e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1048 02 10360216 10365130 Mibi06g1922 06 39724180 39729079 CCT
Mibi06g1922 06 39724180 39729079 Mibi06g1922 06 39724180 39729079 ECH