Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1921 ATGGCTGATCCTTTCTCCAATTTCTTCTCTCCTCCTCCTCCTCCTTCTGGATTTTTCCAATTCAATCCCATCCCTTACTATTATCCTCCTCCTCGTCCTCCTTCTCCTAACCCTTCCCCAGTAGTGTCTTCAAACCCAAATCATCACCATCCTTATCTTCACAACTTCATAGCTACTTCTTCTCCTCCTCCTCCTCCTACTTCACCACCTCTCAGAGAAGCCCTTCCTCTTCTGAACCTAAATCCCACCAAGTCTTGCAGTACTACTTCCATGGAAGTGGAGGAATCTGCTCATCAAAAGGGTAAAGAAGAAGATGATGAAGAGGAAGATGAGGAGGAAGATGATGAGAATAGTGTGACTGTTGCACTACACATAGGGCTTCCTAGCCCTAGTGCTGCTGAGATGGCTTCTATTCTCTCTTCTTCTTCAACTACTCAGGCAGCACAAGAAGGAGGAGGAGGAGATGGTGATGCTGATCTAGCGGATAATTCTTGCTCAGGACTCTCCAGGATCAACAAGGGACAGTACTGGATCCCTACTCCTACTCAGATTCTCATTGGTCCCACCCAATTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAACCAACAGGCATGTTAAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAATAACATTGACCATCCAAGGGCTAAGCCCCTTAAGGATTTTAGAACACTTCAGACACATTATAAGAGAAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGTATTTGTGGATCTGATTTTAAGCACAAAAGATCGCTTAAAGATCATATTAAGGCTTTTGGGAGTGGCCATGCTGCTTATGGGATTGATGGCTTCGAAGAAGAAGATGAGCCAGCTTCTGAAGTAGAGCAAGACAATGATTCCAACCAGTGA 1059 0.4551 MADPFSNFFSPPPPPSGFFQFNPIPYYYPPPRPPSPNPSPVVSSNPNHHHPYLHNFIATSSPPPPPTSPPLREALPLLNLNPTKSCSTTSMEVEESAHQKGKEEDDEEEDEEEDDENSVTVALHIGLPSPSAAEMASILSSSSTTQAAQEGGGGDGDADLADNSCSGLSRINKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSNQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1921 352 SMART c2h2final6 275 295 IPR013087 -
Mibi06g1921 352 SMART c2h2final6 191 213 IPR013087 -
Mibi06g1921 352 SUPERFAMILY beta-beta-alpha zinc fingers 186 213 IPR036236 -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 20 41 - -
Mibi06g1921 352 SUPERFAMILY beta-beta-alpha zinc fingers 257 295 IPR036236 -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 132 160 - -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 80 94 - -
Mibi06g1921 352 Gene3D Classic Zinc Finger 253 328 - -
Mibi06g1921 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 295 IPR013087 -
Mibi06g1921 352 Pfam Zinc finger, C2H2 type 191 210 IPR013087 -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 134 150 - -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 20 119 - -
Mibi06g1921 352 MobiDBLite consensus disorder prediction 58 72 - -
Mibi06g1921 352 FunFam Zinc finger protein WIP2 244 326 - -
Mibi06g1921 352 PANTHER ZINC FINGER PROTEIN WIP2 46 348 IPR043584 GO:0003700|GO:0010468
Mibi06g1921 352 Gene3D Classic Zinc Finger 190 213 - -
Mibi06g1921 352 FunFam zinc finger protein WIP2-like 190 213 - -
Mibi06g1921 352 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Mibi06g1921 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1921 Mibi-ChrMibi06 39702310 39704583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1921 1 349 C2H2 Transcription Factor Family AT3G57670 63.049 2.87e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi06g1921 zf-C2H2 0.0044 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1044 02 10320615 10322979 Mibi06g1921 06 39702310 39704583 CCT
Mibi06g1921 06 39702310 39704583 Mibi06g1921 06 39702310 39704583 ECH