Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1917 ATGGAGAGAAGGAACTCCAAGAAGAAAGCATCAACTCTCTCTTTAGAGCAATTCGTCTCACTCATGGCCCCTCTTGTTGATTTGGAAAAGGAAACTGAGATATCAAGCTCAATCACTTCAGGCGCATCAAGAAGTTTGGATACTGCTCAAAAAAGGGGCTCCACAATCCTCAATTTGAAATGTGTCGATGTCCAGACAGGGCTTATGGGGAAATCTCTTATTGAGTTCCAGTCTACCAAAGGAGATGTTCTTCCTGCACACAAGTTCAGTACACATGACGTTGTGGTTTTAAAACTCAGCAAGGCTGATTTAGGTTCCCCTGCTCTTGGACAAGGTGTAGTTTACCGCTTAAAGGACTCCTCAATAACAGTTGCTTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTCAGGCTGGAGAAAGTGGCCAATGAGGTGACATACCGTAGGATGAAGGATGCATTGGTACAGTTGAGTAAAGGAGTACAAAAGGGTCCTGCTGCGGACTTAATTCCTGTCTTGTTTGGAGAGAGGCCGCCAACAGTGTCCAAGAAGGATGTGTCATTCACTCCATATAACCCCAACCTTGATCACTCTCAGAAAAATGCAATATCAAAGGCCCTATCGTCGAAGAATGTATTTTTGCTCCATGGGCCTCCTGGAACAGGAAAAACGACCACAGTGGTGGAAATCATATTACAAGAAGTGAAGCGTGGATCAAAAATTCTTGTTTGTGCCGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTCCACGTAGAGTTAAGCTGGTTAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTTGACAGTGCACTGGATGCTCAGGTACTTCGAGGAGACAATAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGAAAGTTGTTGAAAACTAAAGACAGAAATACAAGGAGGGACATTCAGAAGGAACTGCGAACTCTGTCCAAAGAAGAGCGGAAAAGACAACAGCTTGCTATAACCGACGTGATTAAAAGTGCTGATGTGATATTAACCACTTTGATTGGGGCCTTTTCTAAGAAGCTGGATAGCACTTCATTTGACTTGGTAATTATTGACGAAGCTGCTCAGGCACTTGAGATAGCATGCTGGATACCCATACTGAAGGGTTCAAGATGTATACTTGCCGGGGACCATCTTCAACTGCCACCAACCATTCAAAGTGTTGAGGCAGAGAAGAAAGGATTAGGACGAACCCTGTTCGAACGACTTGCAGATATGTATGGAGATGAAGTCACATCTATGCTAACTGTCCAGTACCGAATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTCTACAACAGTAAGGTCAAAGCCCATGCAAGTGTTGCTGCGCATATGCTGTTTGATCTTGAAGATGTGAAGAGGACCTCTTCAACTGAACCAACACTTCTTCTCATAGACATAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCATGAATGAAGGTGAAGCTGAAGTTGCCATGGTCCATGCAAAAAGACTTGTGCAGAGTGGTGTGCTGCCTTCTGATATTGGAATCATTACCCCGTATGCTGCTCAGGTTGTTTTACTAAAGATGTTGAAAAACAAGGAGAACTCGCTGAAGGATCTTGAAATCTCAACAGTTGATGGTTTTCAGGGAAGGGAAAAGGCAGCCATTATTATATCAATGGTTCGATCTAATTCAAAAAAAGAGGTGGGCTTTCTCAGTGATCGTCGCCGAATGAATGTGGCTGTGACGCGGGCAAGGAGGCAATGCTGTCTTGTCTGTGACACAGAAACTGTCAGTTCTGATGGATTCCTAAAGCGTTTGATTGAGTATTTTGAAGAGAATGGAGAATATCAGAGTGCTTCAGAGTATCAGAATGAATAG 1944 0.4321 MERRNSKKKASTLSLEQFVSLMAPLVDLEKETEISSSITSGASRSLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVQKGPAADLIPVLFGERPPTVSKKDVSFTPYNPNLDHSQKNAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPRRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAITDVIKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAAHMLFDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMVHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDLEISTVDGFQGREKAAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEENGEYQSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1917 647 Gene3D - 24 427 IPR027417 -
Mibi06g1917 647 CDD DEXXQc_SMUBP2 196 444 - -
Mibi06g1917 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Mibi06g1917 647 SMART AAA_5 211 429 IPR003593 -
Mibi06g1917 647 Gene3D - 41 143 - -
Mibi06g1917 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 622 IPR027417 -
Mibi06g1917 647 Gene3D - 443 647 IPR027417 -
Mibi06g1917 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 15 646 - -
Mibi06g1917 647 Coils Coil 298 318 - -
Mibi06g1917 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Mibi06g1917 647 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Mibi06g1917 647 SMART ultradead3 193 444 IPR014001 -
Mibi06g1917 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Mibi06g1917 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Mibi06g1917 647 Pfam AAA domain 420 616 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1917 Mibi-ChrMibi06 39658608 39664709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1917 138 380 Core DNA Replication Machinery Family AT1G08840 26.613 1.26e-11 66.2