Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1896 ATGATGATGGAGGAAGGGAAGAAGAAGAAGAAAGAGTTGTTGGAAGGAAGGAAGTGGAATATTAATAGTACGGCACCTTTCTTGTTGAAGACATACATGATGGTGGACGATCCTTCCACCGACCACATCATATCGTGGAACTCCGACGGCACGGCGTTTGTGGTGTGGCAGCCGCCGGAGTTTGCACGTGACCTTCTTCCTACCCTCTTCAAGCACTCCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACCTATGGATTTCGTAAGGCGGCAACAAGCAGATGGGAATTTTGCAACAGCAAATTTAGGAAAGGGGAGAAGGAAAAACTAAGCGAGATCAGAAGAAGAAAGGCGTGGTCAAACAGGCAAAATCAACAACAACAAGAGCAAGCAGATAATAATAAGGAATATTCAGAGGAAGAACAGAGGTCTTCTTCAACCTCTTCGTCTTGTGGATATTTGAATCTGATGGATGAAAACAAGAGGCTAAAGAGAGAGAATGGGGCACTCAACTCAGAGCTGGTGGCCATGAAGAGGAAGTGCAGGCACCTTCTTGAGCTGGTGGCTAAGCATTCCAAGACAAATGATGAACAAGAAGAGGACAGGCCTGCCATGTTATTTGGTGTGAGGCTCGATGTGAATACCAACACTACAAACTCCTCTATTTTCCTCCCTCAGTCATGCAAATAA 690 0.4565 MMMEEGKKKKKELLEGRKWNINSTAPFLLKTYMMVDDPSTDHIISWNSDGTAFVVWQPPEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATSRWEFCNSKFRKGEKEKLSEIRRRKAWSNRQNQQQQEQADNNKEYSEEEQRSSSTSSSCGYLNLMDENKRLKRENGALNSELVAMKRKCRHLLELVAKHSKTNDEQEEDRPAMLFGVRLDVNTNTTNSSIFLPQSCK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1896 229 MobiDBLite consensus disorder prediction 113 153 - -
Mibi06g1896 229 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi06g1896 229 Coils Coil 153 180 - -
Mibi06g1896 229 SUPERFAMILY "Winged helix" DNA-binding domain 23 116 IPR036390 -
Mibi06g1896 229 FunFam Heat stress transcription factor B-4 20 117 - -
Mibi06g1896 229 Gene3D - 19 118 IPR036388 -
Mibi06g1896 229 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 193 IPR027725 -
Mibi06g1896 229 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi06g1896 229 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi06g1896 229 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi06g1896 229 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1896 Mibi-ChrMibi06 39440956 39442605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1896 26 191 HSF AT2G41690 57.865 5.37e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi06g1896 HSF_DNA-bind 1.7e-31 CL0123