Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1872 ATGGATCGCCACATTCGTGTTAAGGTTACCACTTACCACACAGTCCAATTTCCCTCATCTTGGTGCGAGTCCCTTATCACTGCTCATCCGTCTTCTTTCCCACCACTCGTCGCCGCCCCAGTGGTTGAACAATGCCGCCGCCATCAGCCATCAGCTGCCTCTAGTTTATGCTTCGACGAGTTAAGAGTGACGAACAGTAAAGGGTGGAGACAGGGAGAGATAGTCGCTTTCAAGCCGGAGAAGAAGCCGCCTTCCTCTTCTTCTTCCTCCGAGAAAACAACACCTCTTTATTCTTCCAAGGCGGCGCCGCTGGTGGAGTCAAGCAACGACGCCGGGTTTTTTTTGTCCAGAAATATGGAAGTCGAGGAGGAACAGACTACGTCAACTGTTTCTGCAGAAACCTCTATTCCATCATCTGATGCTCAAAGCATGGTTTCTCCTGTTCCTGCTGTGCTGCCCCCGCCAATGCAACCTGTAATTCCTACAGCTGTCCTGCCATCTATTGTGCCTCCTATTGCTCCAATTCCTCCCCCCACTACTGTCCGCCCATTGGCACCACTTCCTGTTCGCCCACCATCTGTTAGGCCACCCATTTCGCAAAATGGTGAGGTTGGATCAACTGACTCTGATTCAGATCATGATGACTCAGGCCCTGGAATAAACAAGGGTACAGGGGAGTATGAGATATCGGAAGAGAGTAGACTGATAAGAGAGAGGCAGGAAAGGGCAGTGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCCCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTAGACTTCGCCGTCTTGGTGAACCCATCACTCTTTTTGGTGAAAGGGAGATGGAAAGAAGAGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCTGAAGGTCAGCTGGAAAAGCTAATGAAAGCTCATGAAGATGAAGAGGCCGTAGCTTCTACTGCAAAAGAAGAAGCTGAGGAAGACCTGCAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGGGCAGCAACACGTCTTCATCGTGCTCGTAGAAGAAGAGATGATCCGGATGAAGATATAGATGCGGAAATCGATTGGGCGCTGAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATCGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGCCTTGCAACCTGTTCTCTGACTGGATCCACAAAGCTTTGGGGCATGCCTGAAGTAAAAAAAATTTCCACCTTAAAAGGGCACACAGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCTGCTGACCGCACTGCAAAGTATTGGAATGATCAAGGATCTCTTCTAAAGACATTTGAGGGTCATCTTGATCGGCTTGCTCGTATTTCCTTTCATCCATCTGGGAAGTACTTGGGCACTGCCAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTATATGGCTTGGCTTTCCACCATGACGGATCATTATCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACCGGGAGAAGTATTCTTGCCCTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTACACCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAACCGCAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACATTATCTGGGCATGAAGCAAAAGTTACTTCTCTAGATGTTCTTGGAGATGGACGGTATATTGCCACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGGCTGGTGAACAAGCTATGGATGTTGACTGA 2070 0.4758 MDRHIRVKVTTYHTVQFPSSWCESLITAHPSSFPPLVAAPVVEQCRRHQPSAASSLCFDELRVTNSKGWRQGEIVAFKPEKKPPSSSSSSEKTTPLYSSKAAPLVESSNDAGFFLSRNMEVEEEQTTSTVSAETSIPSSDAQSMVSPVPAVLPPPMQPVIPTAVLPSIVPPIAPIPPPTTVRPLAPLPVRPPSVRPPISQNGEVGSTDSDSDHDDSGPGINKGTGEYEISEESRLIRERQERAVQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAVASTAKEEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLHRARRRRDDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGSTKLWGMPEVKKISTLKGHTERATDVAYSPVHNHLATASADRTAKYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLSASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSSNMAGEQAMDVD 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1872 689 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 375 559 - -
Mibi06g1872 689 MobiDBLite consensus disorder prediction 121 145 - -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 601 IPR001680 GO:0005515
Mibi06g1872 689 Coils Coil 303 327 - -
Mibi06g1872 689 PRINTS G protein beta WD-40 repeat signature 579 593 IPR020472 -
Mibi06g1872 689 PRINTS G protein beta WD-40 repeat signature 495 509 IPR020472 -
Mibi06g1872 689 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Mibi06g1872 689 ProSitePatterns Trp-Asp (WD) repeats signature. 579 593 IPR019775 -
Mibi06g1872 689 Gene3D - 375 559 IPR015943 GO:0005515
Mibi06g1872 689 Pfam pre-mRNA processing factor 4 (PRP4) like 265 291 IPR014906 -
Mibi06g1872 689 ProSitePatterns Trp-Asp (WD) repeats signature. 537 551 IPR019775 -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 644 IPR001680 GO:0005515
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 467 IPR001680 GO:0005515
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 518 555 - -
Mibi06g1872 689 MobiDBLite consensus disorder prediction 77 102 - -
Mibi06g1872 689 Pfam WD domain, G-beta repeat 558 592 IPR001680 GO:0005515
Mibi06g1872 689 Pfam WD domain, G-beta repeat 519 550 IPR001680 GO:0005515
Mibi06g1872 689 Pfam WD domain, G-beta repeat 470 508 IPR001680 GO:0005515
Mibi06g1872 689 Pfam WD domain, G-beta repeat 640 677 IPR001680 GO:0005515
Mibi06g1872 689 Pfam WD domain, G-beta repeat 431 467 IPR001680 GO:0005515
Mibi06g1872 689 Pfam WD domain, G-beta repeat 598 635 IPR001680 GO:0005515
Mibi06g1872 689 ProSitePatterns Trp-Asp (WD) repeats signature. 495 509 IPR019775 -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 467 - -
Mibi06g1872 689 SMART pr04_2 260 313 IPR014906 -
Mibi06g1872 689 MobiDBLite consensus disorder prediction 82 102 - -
Mibi06g1872 689 SUPERFAMILY PRP4-like 244 298 IPR036285 -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 518 559 IPR001680 GO:0005515
Mibi06g1872 689 MobiDBLite consensus disorder prediction 183 233 - -
Mibi06g1872 689 SUPERFAMILY WD40 repeat-like 392 676 IPR036322 GO:0005515
Mibi06g1872 689 Gene3D - 236 305 IPR036285 -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 476 517 IPR001680 GO:0005515
Mibi06g1872 689 CDD WD40 399 677 - -
Mibi06g1872 689 Gene3D - 560 686 IPR015943 GO:0005515
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 476 513 - -
Mibi06g1872 689 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 603 679 - -
Mibi06g1872 689 PANTHER WD40 REPEAT PROTEIN 144 678 - -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 560 594 - -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 635 - -
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 677 - -
Mibi06g1872 689 SMART WD40_4 553 592 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 595 635 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 428 467 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 469 508 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 638 677 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 511 550 IPR001680 GO:0005515
Mibi06g1872 689 SMART WD40_4 384 425 IPR001680 GO:0005515
Mibi06g1872 689 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 677 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1872 480 676 U-box Gene Family AT2G33340 23.529 3.95e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1872 06 39227474 39232419 Mibi06g1872 06 39227474 39232419 ECH