Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi06g1848 | ATGTTCCTTGATCATCCAACCCTAAACATGTCCCTTGAAGATTCCCTAAGATCTCTTTCACTTGACTACCTCAACCTCCTCATCAACGGTCAGGCCTTCAGTGACGTCACCTTCAGCGTGGAGGGCCGTCTCGTCCACGCCCATAGATGCATCCTCGCGGCCCGCAGCCTGTTCTTCAGGAAGTTCTTCTGCGCCCCCGACCCTCCCTCCGGGCTCGACCCGGCGGGCCCTCGGGCCAGCTCCCCAGCCTCCGGCCCACGGCCCGCCATCATCCCCCTTAACTCTGTCGGCTACGAGGTTTTCCTGTTGTTGCTTCAGTTCCTCTACAGCGGCCAGGTGTCTATTGTCCCTCAGAAGCATGAGCCCAGGCCTAATTGCGGTGAGCGTGGGTGTTGGCACACGCATTGCACCTCCGCCGTTGATCTTGCTCTTGAGACTCTCTCCGCCGCTAGAATTTTTGGTGTCGAACAGCTCGCATTGCTCACACAGAAACAGTTAGGGAGCATGGTAGAGAAGGCATCGATCGAAGATGTGATGAAAGTACTGGTAGCATCAAGAAAGCAAGACATGCACCAACTATGGGCCACATGCTCACACCTCGTAGCAAAGTCAGGCCTCCCACCAGAAGTCCTAACCAAACACCTCCCCATCGACCTCGTCGCCAAGATCGAAGAGATCCGCCTCAAATCCTCCTACAACCGCCGCTCCCTCCTCCCCTACCACCACCACCACCACCACGACCTCCGCCTCGCCGACCTCGAAGACAACAAAATCCGCCGCATGAAGCGGGCCCTCGACGCCTCCGACGTGGAGCTCGTCAAGCTCATGGTCATGGGGGAAGGCCTCAATCTAGACGAAGCCCTCGCCTTGCACTACTCCGTAGAGAATTGTAGCCGTGAGGTTGTGAAGGCATTGCTAGAGCTTGGCGCCGCCGATGTCAACTACCCGGCGGGGCCCACCGGGAAGACCCCGCTCCACCTCGCCTCGGAGATGGTGTCGCCGGACATGGTGGCGGTGCTGTTGGACCACCACGCAGATCCCAATGTACGGACGGTGGATGGTGTGACACCGCTTGACATATTAAGAACCCTAACTTCGGATTTTTTGTTCAAAGGGGCCGTACCTGGGCTAACACATATTGAGCCGAACAAGTTGAGGCTGTGTTTGGAGCTGGTGCAATCTGCGGCTATGGTGATATCAAGGGAAGAAGGCAATAATAATAATAATAATAATCCTCCGACGTCGACGGCTATCTATCCGCCCATGAGTGGTGAGGATCATAGTAGTGGAAGTAGTTGCAACCTTAATTTGGATTCTAGGTTGGTTTATTTGAATCTGGGTGCGGCGGCTTCGGGTCAAATGGTTTCGAGATTGGAGGCTGACGATGATGCACATAGGGATACCATGAACCGTCATGGAAGTGGTGGATGTGACCCTTCTATGTACCACCACCACCACCACCATCATTCTCATCATGATTTCTAG | 1485 | 0.5508 | MFLDHPTLNMSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDPPSGLDPAGPRASSPASGPRPAIIPLNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALETLSAARIFGVEQLALLTQKQLGSMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLTKHLPIDLVAKIEEIRLKSSYNRRSLLPYHHHHHHDLRLADLEDNKIRRMKRALDASDVELVKLMVMGEGLNLDEALALHYSVENCSREVVKALLELGAADVNYPAGPTGKTPLHLASEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNNNNNNPPTSTAIYPPMSGEDHSSGSSCNLNLDSRLVYLNLGAAASGQMVSRLEADDDAHRDTMNRHGSGGCDPSMYHHHHHHHSHHDF | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi06g1848 | 494 | ProSiteProfiles | Ankyrin repeat profile. | 320 | 352 | IPR002110 | GO:0005515 | |
| Mibi06g1848 | 494 | ProSiteProfiles | BTB domain profile. | 34 | 117 | IPR000210 | GO:0005515 | |
| Mibi06g1848 | 494 | CDD | BTB_POZ_NPR_plant | 17 | 170 | - | - | |
| Mibi06g1848 | 494 | SUPERFAMILY | Ankyrin repeat | 279 | 363 | IPR036770 | - | |
| Mibi06g1848 | 494 | SMART | ANK_2a | 320 | 349 | IPR002110 | GO:0005515 | |
| Mibi06g1848 | 494 | SMART | ANK_2a | 285 | 315 | IPR002110 | GO:0005515 | |
| Mibi06g1848 | 494 | SUPERFAMILY | POZ domain | 18 | 199 | IPR011333 | - | |
| Mibi06g1848 | 494 | FunFam | regulatory protein NPR5 isoform X2 | 251 | 368 | - | - | |
| Mibi06g1848 | 494 | Pfam | Ankyrin repeats (3 copies) | 269 | 350 | IPR002110 | GO:0005515 | |
| Mibi06g1848 | 494 | Pfam | Domain of unknown function (DUF3420) | 205 | 261 | IPR024228 | - | |
| Mibi06g1848 | 494 | Pfam | BTB/POZ domain | 25 | 118 | IPR000210 | GO:0005515 | |
| Mibi06g1848 | 494 | FunFam | regulatory protein NPR5 isoform X1 | 13 | 203 | - | - | |
| Mibi06g1848 | 494 | Gene3D | - | 252 | 368 | IPR036770 | - | |
| Mibi06g1848 | 494 | PANTHER | BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 | 10 | 486 | IPR044284 | GO:0099402 | |
| Mibi06g1848 | 494 | ProSiteProfiles | Ankyrin repeat region circular profile. | 320 | 350 | - | - | |
| Mibi06g1848 | 494 | SMART | BTB_4 | 34 | 170 | IPR000210 | GO:0005515 | |
| Mibi06g1848 | 494 | Gene3D | Potassium Channel Kv1.1; Chain A | 9 | 203 | IPR011333 | - | |
| Mibi06g1848 | 494 | MobiDBLite | consensus disorder prediction | 465 | 494 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi06g1848 | Mibi-ChrMibi06 | 39032683 | 39036138 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TRAF | Mibi06g1848 | BTB | 7.5e-14 | CL0033 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mibi02g0938 | 02 | 9241254 | 9243579 | Mibi06g1848 | 06 | 39032683 | 39036138 | CCT | |
| Mibi06g1848 | 06 | 39032683 | 39036138 | Mibi06g1848 | 06 | 39032683 | 39036138 | ECH |