Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1808 ATGGAAGATGATTCCTCCTTCGACCCAACGCCCTCTCAAGGCCTTTCGTCGGAAAGATTCCTGCTTGGCTTCGTCTGCGCCCACATCGTTGGGATTCAACACTATTCGGGCACCATCAGTGGGCGTGAAATGGTGGGTCTTGTCCGTGAACCTCTCAACCCCTTCGATGACAACGCCATTAAGGTCATCAACACTCGAGCCACTCAGGTTGGCCATATTGAGCGCTCCGTCGCTGCCGTACTCTCTCCCTTGATCGACTCTCAACTTATCATTGTCGAAGGCATTGTACCCAAAACGCGTTCTGGTAACAAATTTAGAATTCCTTGTCAAATCCATATATTTTCCGCTATTGAGGCTTTCCCAACCGTCGAGGATATTATTTCGGATAGTGGGTTAGCTTTAATTCGAGTTTCTGATGCTGCGTCTACGTTGTCCGTGTCTATGGCTGTGATAGATAAGAGGGCTAAGGATGACGGTAGGACCGTAGATGACATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCTTTGGAGGCTTTGGAGCCTCCTAGAAGTGTCATCAAGACTGATCTTTTCCCACATCAAAAGGAAGGCTTGGGGTGGTTAGTTCATAGAGAGAATTCTGGTGAATTGCCCCCATTTTGGGAAGAGAAAGATGGGGGCTTTGTGAATGTTTTGACTAATTATTTTACGGACATAAGGCCGGAGCCTTTGCGAGGCGGCGTTCTAGCTGATGATATGGGTTTAGGCAAGACCTTAACCTTACTTTCTTTGATTGCTCTTGATAAAGATTCTACTGCTCTGAATATGGCAGAAGGGAAGCATGATGAAACGGCAGAGCGCAATGAATTCGCTCTCTCAAGCGATAAGAAGGGTAAGAGGAGAAGAACAAATAAACAGACCACTGGATCAGAAAAAAGAAGCAAGTCTGAGACTGCTTCTTCAAGAGCCCATGTGATTGGAAAGTCTGTTGCTGTAGATGGCACCCCTTCAACTGGAATGGATATAAAGACTACATTGGTTGTGTGCCCTGCTTCTGTTATTACAACATGGATAACACAGTTAGAAGAGCACACTAAACCAGGCACATTGAAGACGTACATGTATTATGGTGATAAAAGGACCAGGGATGCTGAAGAACTTAAGATGTATGATTTAGTATTGACCACATACACCACTTTAGCCATTGAAGAATCTTCTCCAGGCTCACCCATAAATAGAGTAGAGTGGTGGAGGATCATCTTGGATGAAGCACATGTCATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGCTGCTAATCGTAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTACATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCTTTTGCAACAAAGAGTTATTGGCAGAGCTTAGTGCAACTTCCTCTTACTGAAAGAAACCCTAACGGACTCTTACGTCTCCAGGTTTTGATGGCAACAATTTCACTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCGAGAGCAAGGAACATTGTGGCTGGTTATATAAATGATGGAAGCTTAACGCGCAACTATTCAACCGTACTTAGTATAATCTTACGGCTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTCAAATCTTTACTCCCTTCTAACAACATTGAAGATGTTTCAAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGTTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGCATATCTCCACCAACTGACATTGTAATTACATGCTGTGCTCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAAAGCCTGTTGTCCCCTTTGTCGTCACCCCCTCAAAGAATCTGACTTGTTCTCCGCCCCACCTGAATCGTCTGGTGCTGATGCTGTTGGACTCTCCTCAGACAAAACAAGCTTATCCTCTAAGGTGTCTGCTCTGTTGAAACTTCTTGTTGCCTCAAGGGATCAACATCCGGCCGCAAAATCAGTTGTGTTTTCTCAATTTCGTAAGATGCTGATTTTATTGGAACAGCCTTTGAAAGCAGCTGGTTTCAAGACACTGCGCCTTGATGGGACCATGAACGCTAAACAAAGGGGCCGAGTAATGGAAGAATTTGCAGCTGGAGGAACAGACGAGCCCATGATTCTGCTGGCAAGCCTCAAGGCCTCAGGCACAGGTATAAATCTGACGGCCGCATCCAGAGTATATTTATTGGAGCCGTGGTGGAATCCAGGAGTGGAGGAACAAGCAATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTGAAAACAGTATTGAACAGAGGATATTAGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGATCAAAGGATCGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2586 0.4408 MEDDSSFDPTPSQGLSSERFLLGFVCAHIVGIQHYSGTISGREMVGLVREPLNPFDDNAIKVINTRATQVGHIERSVAAVLSPLIDSQLIIVEGIVPKTRSGNKFRIPCQIHIFSAIEAFPTVEDIISDSGLALIRVSDAASTLSVSMAVIDKRAKDDGRTVDDIFKLVDENISKRGALEALEPPRSVIKTDLFPHQKEGLGWLVHRENSGELPPFWEEKDGGFVNVLTNYFTDIRPEPLRGGVLADDMGLGKTLTLLSLIALDKDSTALNMAEGKHDETAERNEFALSSDKKGKRRRTNKQTTGSEKRSKSETASSRAHVIGKSVAVDGTPSTGMDIKTTLVVCPASVITTWITQLEEHTKPGTLKTYMYYGDKRTRDAEELKMYDLVLTTYTTLAIEESSPGSPINRVEWWRIILDEAHVIKNVNAKQSQAIMKIAANRRWAVTGTPIQNGLHDLFSLMAFLRFQPFATKSYWQSLVQLPLTERNPNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRARNIVAGYINDGSLTRNYSTVLSIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLQKLVELLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRHPLKESDLFSAPPESSGADAVGLSSDKTSLSSKVSALLKLLVASRDQHPAAKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFAAGGTDEPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAENSIEQRILELQEKKKQLAKEAFGKRRSKDRREVGGDDFRMLLSL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1808 861 SMART helicmild6 719 804 IPR001650 -
Mibi06g1808 861 Gene3D - 16 134 - -
Mibi06g1808 861 Pfam Zinc finger, C3HC4 type (RING finger) 616 654 IPR018957 GO:0046872
Mibi06g1808 861 Gene3D - 169 282 IPR038718 -
Mibi06g1808 861 SUPERFAMILY RING/U-box 599 661 - -
Mibi06g1808 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 678 IPR013083 -
Mibi06g1808 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 843 IPR001650 -
Mibi06g1808 861 CDD SF2_C_SNF 685 815 - -
Mibi06g1808 861 ProSitePatterns Zinc finger RING-type signature. 631 640 IPR017907 -
Mibi06g1808 861 ProSiteProfiles Zinc finger RING-type profile. 616 655 IPR001841 -
Mibi06g1808 861 Coils Coil 817 837 - -
Mibi06g1808 861 Pfam HIRAN domain 23 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mibi06g1808 861 Pfam Helicase conserved C-terminal domain 688 804 IPR001650 -
Mibi06g1808 861 SMART ring_2 616 654 IPR001841 -
Mibi06g1808 861 MobiDBLite consensus disorder prediction 274 293 - -
Mibi06g1808 861 SMART HIRAN_2 22 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mibi06g1808 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 851 IPR027417 -
Mibi06g1808 861 MobiDBLite consensus disorder prediction 300 315 - -
Mibi06g1808 861 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 157 850 - -
Mibi06g1808 861 Pfam SNF2-related domain 196 575 IPR000330 GO:0005524|GO:0140658
Mibi06g1808 861 Gene3D - 515 860 IPR027417 -
Mibi06g1808 861 Gene3D - 322 506 IPR038718 -
Mibi06g1808 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 467 IPR014001 -
Mibi06g1808 861 MobiDBLite consensus disorder prediction 274 328 - -
Mibi06g1808 861 SMART ultradead3 189 486 IPR014001 -
Mibi06g1808 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 496 IPR027417 -
Mibi06g1808 861 CDD RING-HC_HLTF 615 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1808 Mibi-ChrMibi06 38671157 38675073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1808 12 861 RAD5 or RAD16-like Gene Family AT5G05130 63.115 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi06g1808 SNF2_N 3.1e-75 CL0023