Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1769 ATGGGGAGGAAGCGAAAGCTCACGCCGAAACCCGGCGAATCCGCCGAACCCCCATTGAAGCAACAACATCAACAGCCGCAATTTGTACCAGAAGAGGACCAAACTGTTGAAGACCAAGATAATGGAGCCGATTACGAAGAAGTCGAAGTCGAAGAAGAGGAGGAGGTAGATGAAGAGGAAGAGGAGGAGGAAGATCCAGAAGAAGGATCTGGAGACGATGACGCTAATCCTGATCACGCCCAAAATGCGAACGATCATGCATCTAAGGCCCAGTCAGCATCAGTTACCACCGATCAACATGAAAAGGAGGAGGAAGAGGACGACGAGCCGATTCATAAGCTTCTAGAACCTTTCAGCAAGGAACAGATTCTAAATCTGCTGTACGAAGCGGCGAACAAGCATCGTGATATAGCGGATCGGATCCGAAAGGTGGCTGATGAGGATCCAGCTCATCGGAAAATTTTTGTGCACGGCCTCGGATGGGACACAAACGCTGAAACCCTAGTTAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCGGTGTGTGATAAGGTATCCGGTAAATCTAAGGGTTATGGTTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGATTGGCCCGGTTCAACAGCCACCACCGGTTCAAGCAGCCCCAGCGCAACCGGTATCAGAGTATACTCAAAGGAAGATTTACGTCAGCAATGTTGGGGCTGATTTGGATCCTCAGAAATTGCAAGTGTTTTTTTCCAAGTTTGGGGAGATTGAAGAAGGGCCATTAGGGCTTGATAAGATGACTGGGAAGCCAAAAGGGTTCTGCTTGTTTGTGTACAAGAGCGTTGAGAGTGCTAGAAAAGCGTTGGAGGAGCCTCATAAGGAATTTGAGGGCCATATTTTGCATTGTCAGAAGGCAATAGATGGTCCAAAGCCGGGAAAGCAGCAATATCAGCAACATCAGAATCCTCAGAGAACTCAATTCCAGAGAAATGAGCCCTCTTCATATGTTGGTGGGGCTGTTGCAGGACAAGGGCACCTCATGGCGCCTGCGGGAACTGGTATTGGATATAACCAGCAGGCGGCGGCGCAGCCGGGGCTGAATCCGGCTCTTGGGCAGGCACTGACAGCACTGCTTGCAACTCAAGGGGCTGGCTTGGGGCTGACCAATTTATTGGGAACCCTTGGATCAGCCACTGCAGTAAACCCGGCTGTTCCTTCTGCAGGCCATGGAATTCAGGGTGGTTACAGGGACATATCCAAGCCAGCAAGTGGGACAAAGTGGTTCCGGTAG 1356 0.5066 MGRKRKLTPKPGESAEPPLKQQHQQPQFVPEEDQTVEDQDNGADYEEVEVEEEEEVDEEEEEEEDPEEGSGDDDANPDHAQNANDHASKAQSASVTTDQHEKEEEEDDEPIHKLLEPFSKEQILNLLYEAANKHRDIADRIRKVADEDPAHRKIFVHGLGWDTNAETLVNVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPPPVQAAPAQPVSEYTQRKIYVSNVGADLDPQKLQVFFSKFGEIEEGPLGLDKMTGKPKGFCLFVYKSVESARKALEEPHKEFEGHILHCQKAIDGPKPGKQQYQQHQNPQRTQFQRNEPSSYVGGAVAGQGHLMAPAGTGIGYNQQAAAQPGLNPALGQALTALLATQGAGLGLTNLLGTLGSATAVNPAVPSAGHGIQGGYRDISKPASGTKWFR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1769 451 MobiDBLite consensus disorder prediction 33 72 - -
Mibi06g1769 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 322 IPR000504 GO:0003723
Mibi06g1769 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 220 IPR000504 GO:0003723
Mibi06g1769 451 MobiDBLite consensus disorder prediction 329 354 - -
Mibi06g1769 451 MobiDBLite consensus disorder prediction 335 354 - -
Mibi06g1769 451 Gene3D - 143 230 IPR012677 -
Mibi06g1769 451 MobiDBLite consensus disorder prediction 81 95 - -
Mibi06g1769 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 328 IPR000504 GO:0003723
Mibi06g1769 451 MobiDBLite consensus disorder prediction 1 111 - -
Mibi06g1769 451 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 40 329 - -
Mibi06g1769 451 SUPERFAMILY RNA-binding domain, RBD 149 236 IPR035979 GO:0003676
Mibi06g1769 451 MobiDBLite consensus disorder prediction 18 32 - -
Mibi06g1769 451 Coils Coil 42 65 - -
Mibi06g1769 451 CDD RRM_RBM24_RBM38_like 152 227 - -
Mibi06g1769 451 Gene3D - 233 364 IPR012677 -
Mibi06g1769 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 245 IPR000504 GO:0003723
Mibi06g1769 451 SMART rrm1_1 153 225 IPR000504 GO:0003723
Mibi06g1769 451 SMART rrm1_1 253 325 IPR000504 GO:0003723
Mibi06g1769 451 MobiDBLite consensus disorder prediction 96 111 - -
Mibi06g1769 451 CDD RRM_RBM24_RBM38_like 252 327 - -
Mibi06g1769 451 SUPERFAMILY RNA-binding domain, RBD 235 351 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1769 Mibi-ChrMibi06 38319785 38321202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1769 251 437 C2H2 Transcription Factor Family AT2G19380 31.553 6.03e-13 68.9