LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g1703	ATGGAGATTCACTTCCAGCAACCAAAGCAGCTTCAGAAAGCATCAGTTGTTCCAATCAGAAGAGGAGGCAGGTTCAAAGGAAGGAACAAGAACAATGGCACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCCGCCTGCCTCCTTCGAGGATCCAACACTCGCACCAACTTCAGTACCCGTGTCTCCATGGATTCTCCTCTTGCTTCTCGTATTCGAAATCTGCTGAACAACAGAAAAGGAACCAAAGAACAAGATGCTGATGCTGATGCTTCTTCTTCAAGAGTCAACCCTACTACTAGCTCTACCAGTACTAATACTACTACTAGGAGCTCAGACTCATCAAGCAATGATGACAAAAATGATAGCTCTCTCTCTAGTGGGAAAATTCAGAACACAGAGTTATTTGGTGATGGATATAGACCAGATTTGAGCAGCTTCAGGGAGGGGTTTGATTTGGGTCCCCAGTCTAATCTTTCATGGGGTATTGGACCTCTGATTGATCGTTTTCCTTTTGCTCAAGTATTGGAAGTGCCAAACTCTAATGGTTTTGCTGACAGAGTTGAGTTAGAGATTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATTTCAGCTTCGCTCTACGCAATTAATGGAGTGCATGAGTACATGGAAACTGTCCAGGACTCTAATGAAGAAGCTCTTTGGGATCTTCCACCATTATGGTCAATTTTCAGCTAA	825	0.4339	MEIHFQQPKQLQKASVVPIRRGGRFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFSTRVSMDSPLASRIRNLLNNRKGTKEQDADADASSSRVNPTTSSTSTNTTTRSSDSSSNDDKNDSSLSSGKIQNTELFGDGYRPDLSSFREGFDLGPQSNLSWGIGPLIDRFPFAQVLEVPNSNGFADRVELEISEFERMKVERQISASLYAINGVHEYMETVQDSNEEALWDLPPLWSIFS	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g1703	274	Gene3D	AP2/ERF domain	35	96	IPR036955	GO:0003700\|GO:0006355
	Mibi06g1703	274	SUPERFAMILY	DNA-binding domain	36	94	IPR016177	GO:0003677
	Mibi06g1703	274	CDD	AP2	36	92	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	28	239	-	-
	Mibi06g1703	274	ProSiteProfiles	AP2/ERF domain profile.	36	93	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	FunFam	ethylene-responsive transcription factor RAP2-11	35	94	-	-
	Mibi06g1703	274	SMART	rav1_2	36	99	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	MobiDBLite	consensus disorder prediction	125	167	-	-
	Mibi06g1703	274	PRINTS	Ethylene responsive element binding protein signature	37	48	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	PRINTS	Ethylene responsive element binding protein signature	59	75	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	Pfam	AP2 domain	36	85	IPR001471	GO:0003700\|GO:0006355
	Mibi06g1703	274	MobiDBLite	consensus disorder prediction	111	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g1703	Mibi-ChrMibi06	37463861	37464685	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g1703	24	274	AP2-EREBP Transcription Factor Family	AT5G19790	41.923	2.42e-49	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi06g1703		AP2	6e-14	CL0081